0.46 527 527 U 0 unclassified 99.54 115021 5 R 1 root 99.54 115016 0 R1 131567 cellular organisms 99.54 115016 31159 D 2 Bacteria 55.09 63656 622 P 1224 Pseudomonadota 50.03 57813 3599 C 1236 Gammaproteobacteria 37.43 43246 3345 O 91347 Enterobacterales 30.99 35810 4036 F 543 Enterobacteriaceae 14.89 17210 344 G 561 Escherichia 14.44 16688 15576 S 562 Escherichia coli 0.24 273 273 S1 316435 Escherichia coli Nissle 1917 0.22 252 19 S1 83334 Escherichia coli O157:H7 0.16 183 183 S2 155864 Escherichia coli O157:H7 str. EDL933 0.02 26 26 S2 502346 Escherichia coli O157:H7 str. TW14588 0.02 24 24 S2 1328859 Escherichia coli O157:H7 str. SS17 0.12 133 133 S1 2079157 Escherichia coli O2:H1 0.07 85 85 S1 331112 Escherichia coli HS 0.07 83 83 S1 1446600 Escherichia coli O15:H18 0.07 83 83 S1 1322345 Escherichia coli ATCC 25922 0.07 79 79 S1 2874053 Escherichia coli O25:H1 0.04 47 47 S1 244320 Escherichia coli O55:H7 0.04 45 45 S1 655817 Escherichia coli ABU 83972 0.01 12 0 S1 1038927 Escherichia coli O104:H4 0.01 12 12 S2 1134782 Escherichia coli O104:H4 str. 2009EL-2050 0.01 9 9 S1 376725 Escherichia coli O103:H2 0.01 6 6 S1 362663 Escherichia coli 536 0.00 5 5 S1 439855 Escherichia coli SMS-3-5 0.08 92 92 S 1499973 Escherichia marmotae 0.06 73 73 S 208962 Escherichia albertii 0.01 12 12 S 564 Escherichia fergusonii 0.00 1 0 G1 2608889 unclassified Escherichia 0.00 1 1 S 2044467 Escherichia sp. E4742 5.06 5852 94 G 590 Salmonella 4.84 5596 1354 S 28901 Salmonella enterica 3.67 4242 182 S1 59201 Salmonella enterica subsp. enterica 1.17 1355 1355 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.75 872 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.70 804 804 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.04 49 49 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.02 19 19 S3 1173427 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 0.35 407 21 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.32 372 372 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.01 14 14 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.35 400 400 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.28 320 320 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.27 310 310 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.12 144 110 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.02 19 19 S3 1454647 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810 0.01 15 15 S3 1008297 Salmonella enterica subsp. enterica serovar Typhimurium str. 798 0.04 49 49 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.04 45 45 S2 115981 Salmonella enterica subsp. enterica serovar Montevideo 0.04 44 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.04 44 44 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.03 31 31 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.02 22 4 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.02 18 18 S3 858307 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 0.02 20 20 S2 29474 Salmonella enterica subsp. enterica serovar California 0.01 9 9 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.01 8 8 S2 98360 Salmonella enterica subsp. enterica serovar Dublin 0.01 6 6 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.00 4 4 S2 82689 Salmonella enterica subsp. enterica serovar Muenster 0.00 4 4 S2 595 Salmonella enterica subsp. enterica serovar Infantis 0.00 3 0 S2 57046 Salmonella enterica subsp. enterica serovar Paratyphi C 0.00 3 3 S3 476213 Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 0.00 3 3 S2 487004 Salmonella enterica subsp. enterica serovar Uganda 0.00 2 2 S2 440524 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- 0.00 1 1 S2 192954 Salmonella enterica subsp. enterica serovar Mbandaka 0.00 1 1 S2 913076 Salmonella enterica subsp. enterica serovar Johannesburg 0.14 162 0 S 54736 Salmonella bongori 0.14 162 162 S1 1299282 Salmonella bongori CFSAN000510 3.96 4574 2 G 547 Enterobacter 3.93 4542 10 G1 354276 Enterobacter cloacae complex 2.63 3042 3042 S 299767 Enterobacter ludwigii 1.03 1191 1180 S 158836 Enterobacter hormaechei 0.01 11 11 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.13 145 17 S 550 Enterobacter cloacae 0.11 128 128 S1 336306 Enterobacter cloacae subsp. cloacae 0.06 74 74 S 208224 Enterobacter kobei 0.06 66 66 S 61645 Enterobacter asburiae 0.01 12 12 S 1812935 Enterobacter roggenkampii 0.00 2 2 S 3029761 Enterobacter pasteurii 0.02 27 27 S 881260 Enterobacter bugandensis 0.00 2 0 G1 2608935 unclassified Enterobacter 0.00 1 1 S 2742676 Enterobacter sp. RHBSTW-00994 0.00 1 1 S 2870346 Enterobacter sp. C2 0.00 1 1 S 2478464 Enterobacter oligotrophicus 1.68 1945 0 F1 2890311 Klebsiella/Raoultella group 1.66 1922 20 G 570 Klebsiella 1.37 1578 1345 S 573 Klebsiella pneumoniae 0.12 138 131 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.01 7 7 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.08 95 95 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.11 125 25 S 1463165 Klebsiella quasipneumoniae 0.09 100 100 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.05 61 15 S 244366 Klebsiella variicola 0.04 46 46 S1 640131 Klebsiella variicola At-22 0.04 49 49 S 548 Klebsiella aerogenes 0.04 43 43 S 1134687 Klebsiella michiganensis 0.02 28 0 G1 2608929 unclassified Klebsiella 0.02 21 21 S 2851540 Klebsiella sp. PL-2018 0.01 7 7 S 2829835 Klebsiella sp. P1954 0.01 9 9 S 2153354 Klebsiella huaxiensis 0.01 7 7 S 1259973 Klebsiella electrica 0.00 2 2 S 2587529 Klebsiella pasteurii 0.02 23 0 G 160674 Raoultella 0.01 17 17 S 54291 Raoultella ornithinolytica 0.00 5 5 S 575 Raoultella planticola 0.00 1 0 G1 2627600 unclassified Raoultella 0.00 1 1 S 2799495 Raoultella sp. XY-1 0.41 472 7 G 544 Citrobacter 0.32 372 0 G1 1344959 Citrobacter freundii complex 0.14 161 161 S 1639133 Citrobacter portucalensis 0.10 114 114 S 67828 Citrobacter gillenii 0.04 49 0 G2 2816438 unclassified Citrobacter freundii complex 0.04 47 47 S 1686385 Citrobacter sp. BIDMC108 0.00 2 2 S 2077149 Citrobacter freundii complex sp. CFNIH9 0.04 43 43 S 546 Citrobacter freundii 0.00 5 5 S 67827 Citrobacter werkmanii 0.05 52 0 S 35703 Citrobacter amalonaticus 0.05 52 52 S1 1261127 Citrobacter amalonaticus Y19 0.03 39 39 S 2971264 Citrobacter enshiensis 0.00 1 1 S 67825 Citrobacter rodentium 0.00 1 1 S 1563222 Citrobacter pasteurii 0.35 409 1 G 620 Shigella 0.34 394 394 S 623 Shigella flexneri 0.01 14 14 S 621 Shigella boydii 0.22 259 0 F1 191675 Enterobacteriaceae incertae sedis 0.22 259 1 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.17 194 0 F3 84564 ant endosymbionts 0.09 102 0 G 1699619 Candidatus Westeberhardia 0.09 102 102 S 1594731 Candidatus Westeberhardia cardiocondylae 0.08 92 3 G 203804 Candidatus Blochmanniella 0.07 77 23 G1 711328 unclassified Candidatus Blochmanniella 0.04 49 49 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.00 4 4 S 2681987 Blochmannia endosymbiont of Colobopsis nipponica 0.00 1 1 S 2681986 Blochmannia endosymbiont of Camponotus nipponensis 0.01 8 8 S 251538 Candidatus Blochmannia ocreatus 0.00 2 0 S 251535 Candidatus Blochmanniella vafra 0.00 2 2 S1 859654 Candidatus Blochmanniella vafra str. BVAF 0.00 2 2 S 251540 Candidatus Blochmannia vicinus 0.03 34 0 F3 146507 aphid secondary symbionts 0.02 19 19 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.01 9 6 G 568987 Candidatus Hamiltonella 0.00 3 3 S 138072 Candidatus Hamiltonella defensa 0.00 3 3 S 134287 secondary endosymbiont of Heteropsylla cubana 0.00 3 0 G 568988 Candidatus Regiella 0.00 3 0 G1 3077955 unclassified Candidatus Regiella 0.00 3 3 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.02 20 0 G 1302410 Candidatus Annandia 0.02 20 20 S 1302411 Candidatus Annandia adelgestsuga 0.00 4 0 G 1906660 Candidatus Mikella 0.00 4 4 S 1778264 Candidatus Mikella endobia 0.00 3 0 G 472825 Candidatus Purcelliella 0.00 3 3 S 472834 Candidatus Purcelliella pentastirinorum 0.00 2 0 G 1906659 Candidatus Hoaglandella 0.00 2 2 S 1778263 Candidatus Hoaglandella endobia 0.00 1 0 G 1906661 Candidatus Gullanella 0.00 1 1 S 1070130 Candidatus Gullanella endobia 0.22 253 0 G 2815296 Jejubacter 0.22 253 253 S 2579935 Jejubacter calystegiae 0.21 244 0 G 1330547 Kosakonia 0.20 228 228 S 208223 Kosakonia cowanii 0.01 16 16 S 283686 Kosakonia radicincitans 0.18 210 24 F1 36866 unclassified Enterobacteriaceae 0.08 96 96 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.07 79 79 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.01 7 7 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.00 3 3 S 2675782 Enterobacteriaceae endosymbiont of Donacia proxima 0.00 1 1 S 2675786 Enterobacteriaceae endosymbiont of Donacia thalassina 0.10 112 0 G 409304 Candidatus Ishikawella 0.10 112 0 S 168169 Candidatus Ishikawella capsulata 0.10 112 112 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.05 52 0 G 1048757 Candidatus Moranella 0.05 52 52 S 1048758 Candidatus Moranella endobia 0.04 50 0 G 2303321 Superficieibacter 0.04 50 0 G1 2645744 unclassified Superficieibacter 0.04 50 50 S 3031919 Superficieibacter sp. HKU1 0.04 44 0 G 1330545 Lelliottia 0.04 44 44 S 61646 Lelliottia amnigena 0.03 38 0 G 1177214 Candidatus Profftia 0.03 33 0 G1 2735709 unclassified Candidatus Profftia 0.03 33 33 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.00 4 4 S 1177216 Candidatus Profftia tarda 0.00 1 1 S 1987921 Candidatus Profftia lariciata 0.01 16 0 G 2726810 Scandinavium 0.01 16 16 S 1851514 Scandinavium goeteborgense 0.01 11 0 G 702 Plesiomonas 0.01 11 11 S 703 Plesiomonas shigelloides 0.01 10 0 G 1335483 Shimwellia 0.01 10 10 S 563 Shimwellia blattae 0.00 4 4 G 158483 Cedecea 0.00 3 3 G 401618 Candidatus Riesia 0.00 2 2 G 413496 Cronobacter 0.00 2 0 G 82976 Buttiauxella 0.00 1 1 S 82977 Buttiauxella agrestis 0.00 1 0 G1 2634062 unclassified Buttiauxella 0.00 1 1 S 2986951 Buttiauxella sp. WJP83 0.00 1 0 G 1081630 Candidatus Schneideria 0.00 1 1 S 1081631 Candidatus Schneideria nysicola 0.00 1 0 G 83654 Leclercia 0.00 1 0 G1 2627398 unclassified Leclercia 0.00 1 1 S 2282309 Leclercia sp. W17 1.62 1877 0 F 2812006 Bruguierivoracaceae 1.62 1877 0 G 84565 Sodalis 1.34 1545 1545 S 2697027 Sodalis ligni 0.26 296 0 S 1486991 Candidatus Sodalis pierantonius 0.26 296 296 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.02 27 0 G1 2636512 unclassified Sodalis 0.02 27 27 S 1929246 Sodalis endosymbiont of Henestaris halophilus 0.01 9 9 S 1239307 Sodalis praecaptivus 0.84 968 7 F 1903411 Yersiniaceae 0.47 545 0 G 613 Serratia 0.33 379 379 S 138074 Serratia symbiotica 0.06 72 72 S 614 Serratia liquefaciens 0.04 44 44 S 61652 Serratia rubidaea 0.03 31 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.03 31 31 S 2785630 Serratia sp. CMO1 0.02 19 0 S 82996 Serratia plymuthica 0.02 19 19 S1 1006598 Serratia plymuthica RVH1 0.34 389 0 G 629 Yersinia 0.26 306 2 G1 1649845 Yersinia pseudotuberculosis complex 0.26 304 11 S 632 Yersinia pestis 0.22 258 258 S1 748678 Yersinia pestis str. Pestoides B 0.01 15 15 S1 649716 Yersinia pestis Pestoides G 0.01 9 9 S1 360102 Yersinia pestis Antiqua 0.01 8 8 S1 1345701 Yersinia pestis 790 0.00 2 2 S1 1035377 Yersinia pestis A1122 0.00 1 1 S1 1345702 Yersinia pestis 2944 0.07 80 80 S 935293 Yersinia entomophaga 0.00 3 3 S 630 Yersinia enterocolitica 0.02 27 27 G 1927833 Candidatus Fukatsuia 0.38 434 15 F 1903414 Morganellaceae 0.11 122 0 G 581 Morganella 0.11 122 117 S 582 Morganella morganii 0.00 5 5 S1 180434 Morganella morganii subsp. morganii 0.09 104 21 G 637 Arsenophonus 0.04 42 0 G1 2627083 unclassified Arsenophonus 0.03 32 32 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.01 9 9 S 3041619 Arsenophonus sp. aPb 0.00 1 1 S 634121 Arsenophonus symbiont of Ornithomya chloropus 0.03 36 36 S 638 Arsenophonus nasoniae 0.00 5 5 S 634113 Candidatus Arsenophonus lipoptenae 0.07 84 0 G 583 Proteus 0.07 84 84 S 584 Proteus mirabilis 0.04 42 1 G 626 Xenorhabdus 0.02 26 0 S 40577 Xenorhabdus poinarii 0.02 26 26 S1 1354304 Xenorhabdus poinarii G6 0.01 12 12 S 290110 Xenorhabdus budapestensis 0.00 2 2 S 351671 Xenorhabdus doucetiae 0.00 1 0 S 40576 Xenorhabdus bovienii 0.00 1 1 S1 406818 Xenorhabdus bovienii SS-2004 0.04 42 41 G 29487 Photorhabdus 0.00 1 1 S 171438 Photorhabdus akhurstii 0.02 25 0 G 586 Providencia 0.01 14 0 S 516075 Providencia sneebia 0.01 14 14 S1 1141660 Providencia sneebia DSM 19967 0.01 6 6 S 1715285 Candidatus Providencia siddallii 0.00 5 0 G1 2633465 unclassified Providencia 0.00 4 4 S 2939731 Providencia sp. PROV188 0.00 1 1 S 2949878 Providencia sp. PROV175 0.35 399 7 F 1903409 Erwiniaceae 0.21 245 0 G 551 Erwinia 0.15 173 173 S 1922217 Candidatus Erwinia haradaeae 0.06 64 0 G1 2622719 unclassified Erwinia 0.05 63 63 S 215689 Erwinia sp. Ejp617 0.00 1 1 S 3141543 Erwinia sp. HDF1-3R 0.01 7 7 S 65700 Erwinia tracheiphila 0.00 1 1 S 552 Erwinia amylovora 0.09 103 2 G 53335 Pantoea 0.04 50 50 S 59814 Pantoea dispersa 0.04 45 45 S 1235990 Candidatus Pantoea carbekii 0.00 3 3 S 66269 Pantoea stewartii 0.00 3 0 G1 2630326 unclassified Pantoea 0.00 1 1 S 3037258 Pantoea sp. X85 0.00 1 1 S 3028622 Pantoea sp. Lij88 0.00 1 1 S 592316 Pantoea sp. At-9b 0.03 34 0 G 32199 Buchnera 0.03 34 31 S 9 Buchnera aphidicola 0.00 1 1 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.00 1 1 S1 1241884 Buchnera aphidicola (Therioaphis trifolii) 0.00 1 1 S1 1965431 Buchnera aphidicola (Ceratoglyphina bambusae) 0.01 10 0 G 2997349 Winslowiella 0.01 10 10 S 92490 Winslowiella toletana 0.27 308 1 F 1903410 Pectobacteriaceae 0.13 154 56 G 204037 Dickeya 0.05 54 54 S 1089444 Dickeya solani 0.02 24 24 S 1778540 Dickeya fangzhongdai 0.01 11 11 S 204042 Dickeya zeae 0.01 9 0 S 204038 Dickeya dadantii 0.01 8 8 S1 1224149 Dickeya dadantii NCPPB 3537 0.00 1 1 S1 198628 Dickeya dadantii 3937 0.13 151 0 G 122277 Pectobacterium 0.08 89 68 S 1905730 Pectobacterium parmentieri 0.02 21 21 S1 561231 Pectobacterium parmentieri WPP163 0.03 40 40 S 2488639 Pectobacterium versatile 0.01 11 0 G1 2627739 unclassified Pectobacterium 0.01 11 11 S 2738983 Pectobacterium sp. PL64 0.01 8 8 S 2485124 Pectobacterium polonicum 0.00 2 2 S 180957 Pectobacterium brasiliense 0.00 1 1 S 2778550 Pectobacterium parvum 0.00 2 0 G 71655 Brenneria 0.00 1 1 S 55213 Brenneria rubrifaciens 0.00 1 1 S 2722756 Brenneria izadpanahii 0.06 74 0 F 1903412 Hafniaceae 0.06 74 63 G 635 Edwardsiella 0.01 7 7 S 636 Edwardsiella tarda 0.00 4 4 S 67780 Edwardsiella ictaluri 0.03 29 0 F 3120698 Gallaecimonadaceae 0.03 29 0 G 745410 Gallaecimonas 0.03 29 29 S 3029055 Gallaecimonas kandeliae 0.00 2 0 F 1903416 Budviciaceae 0.00 2 0 G 2172100 Limnobaculum 0.00 2 2 S 2498113 Limnobaculum zhutongyuii 2.61 3020 0 O 2887326 Moraxellales 2.61 3020 36 F 468 Moraxellaceae 2.39 2765 1475 G 469 Acinetobacter 0.92 1066 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.71 818 815 S 470 Acinetobacter baumannii 0.00 3 3 S1 1279013 Acinetobacter baumannii PR07 0.20 233 227 S 48296 Acinetobacter pittii 0.01 6 6 S1 871585 Acinetobacter pittii PHEA-2 0.01 10 10 S 106654 Acinetobacter nosocomialis 0.00 4 4 S 471 Acinetobacter calcoaceticus 0.00 1 1 S 1530123 Acinetobacter seifertii 0.09 104 58 G1 196816 unclassified Acinetobacter 0.02 22 22 S 2983215 Acinetobacter sp. ESL0695 0.01 6 6 S 3151496 Acinetobacter sp. ANC 7955 0.00 5 5 S 3151491 Acinetobacter sp. ANC 7914 0.00 5 5 S 1827285 Acinetobacter sp. MYb10 0.00 3 3 S 3045147 Acinetobacter sp. KCTC 92772 0.00 2 2 S 2714110 Acinetobacter sp. Marseille-Q1620 0.00 2 2 S 2919376 Acinetobacter sp. AOR07_HL 0.00 1 1 S 3003393 Acinetobacter sp. TR11 0.04 49 49 S 40214 Acinetobacter johnsonii 0.03 38 38 S 202956 Acinetobacter towneri 0.01 11 11 S 28090 Acinetobacter lwoffii 0.01 8 8 S 280145 Acinetobacter colistiniresistens 0.00 4 0 S 1148157 Acinetobacter oleivorans 0.00 4 4 S1 436717 Acinetobacter oleivorans DR1 0.00 2 0 S 52133 Acinetobacter venetianus 0.00 2 2 S1 1197884 Acinetobacter venetianus VE-C3 0.00 2 2 S 1789224 Acinetobacter larvae 0.00 2 2 S 756892 Acinetobacter indicus 0.00 1 1 S 2662362 Acinetobacter wanghuae 0.00 1 1 S 487316 Acinetobacter soli 0.00 1 1 S 106649 Acinetobacter guillouiae 0.00 1 1 S 106648 Acinetobacter bereziniae 0.17 195 131 G 475 Moraxella 0.05 60 60 S 2904120 Moraxella nasibovis 0.00 3 3 S 34062 Moraxella osloensis 0.00 1 1 S 90241 Moraxella lincolnii 0.02 20 13 G 497 Psychrobacter 0.01 7 7 G1 196806 unclassified Psychrobacter 0.00 4 0 G 2824158 Aquirhabdus 0.00 4 4 S 2283318 Aquirhabdus parva 1.88 2174 0 O 135625 Pasteurellales 1.88 2174 5 F 712 Pasteurellaceae 1.84 2122 0 G 713 Actinobacillus 1.81 2094 0 S 718 Actinobacillus equuli 1.81 2094 2094 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.02 28 28 S 157339 Actinobacillus arthritidis 0.01 17 1 G 745 Pasteurella 0.01 16 16 S 747 Pasteurella multocida 0.01 10 0 G 2899790 Mergibacter 0.01 10 10 S 221402 Mergibacter septicus 0.01 9 0 G 75984 Mannheimia 0.01 6 6 S 85402 Mannheimia granulomatis 0.00 3 3 S 75985 Mannheimia haemolytica 0.01 8 0 G 724 Haemophilus 0.01 6 6 S 729 Haemophilus parainfluenzae 0.00 1 1 S 727 Haemophilus influenzae 0.00 1 0 G1 2609962 unclassified Haemophilus 0.00 1 1 S 712310 Haemophilus sp. oral taxon 036 0.00 2 0 G 155493 Gallibacterium 0.00 2 2 S 750 Gallibacterium anatis 0.00 1 1 G 292486 Avibacterium 1.38 1596 0 O 135623 Vibrionales 1.38 1596 152 F 641 Vibrionaceae 1.04 1197 23 G 662 Vibrio 0.70 806 0 S 52443 Vibrio tapetis 0.70 806 806 S1 1671868 Vibrio tapetis subsp. tapetis 0.14 160 160 S 666 Vibrio cholerae 0.07 76 3 G1 2614977 unclassified Vibrio 0.05 61 61 S 2661921 Vibrio sp. THAF191c 0.01 7 7 S 2661922 Vibrio sp. THAF191d 0.00 2 2 S 2819099 Vibrio sp. SCSIO 43155 0.00 2 2 S 2819103 Vibrio sp. SCSIO 43009 0.00 1 1 S 2817385 Vibrio sp. ABG19 0.04 51 0 G1 717610 Vibrio harveyi group 0.04 44 43 S 670 Vibrio parahaemolyticus 0.00 1 1 S1 745023 Vibrio parahaemolyticus 10329 0.00 4 4 S 669 Vibrio harveyi 0.00 3 3 S 663 Vibrio alginolyticus 0.03 34 34 S 2572923 Vibrio taketomensis 0.01 14 0 G1 87806 environmental samples 0.01 14 14 S 114054 uncultured Vibrio sp. 0.01 12 0 S 672 Vibrio vulnificus 0.01 12 12 S1 914127 Vibrio vulnificus MO6-24/O 0.01 11 11 S 104609 Vibrio penaeicida 0.00 4 4 S 29495 Vibrio navarrensis 0.00 4 0 G1 1891919 Vibrio oreintalis group 0.00 4 4 S 29498 Vibrio tubiashii 0.00 2 2 S 55601 Vibrio anguillarum 0.21 242 7 G 657 Photobacterium 0.14 156 39 S 553611 Photobacterium leiognathi 0.10 117 117 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.07 79 2 S 38293 Photobacterium damselae 0.05 61 61 S1 38294 Photobacterium damselae subsp. piscicida 0.01 16 16 S1 85581 Photobacterium damselae subsp. damselae 0.00 5 0 G 511678 Aliivibrio 0.00 5 0 S 40269 Aliivibrio salmonicida 0.00 5 5 S1 316275 Aliivibrio salmonicida LFI1238 1.13 1303 0 O 135624 Aeromonadales 1.13 1302 170 F 84642 Aeromonadaceae 0.65 746 12 G 642 Aeromonas 0.51 591 591 S 654 Aeromonas veronii 0.06 73 73 S 652 Aeromonas schubertii 0.05 52 0 G1 257493 unclassified Aeromonas 0.04 47 47 S 2560029 Aeromonas sp. 2692-1 0.00 5 5 S 2920537 Aeromonas sp. 19NY04SH05-1 0.01 12 12 S 648 Aeromonas caviae 0.00 3 3 S 645 Aeromonas salmonicida 0.00 3 0 S 651 Aeromonas media 0.00 3 3 S1 1208104 Aeromonas media WS 0.30 347 0 G 225143 Oceanisphaera 0.30 346 346 S 1903694 Oceanisphaera avium 0.00 1 1 S 1416627 Oceanisphaera profunda 0.03 36 1 G 43947 Tolumonas 0.03 34 34 S 43948 Tolumonas auensis 0.00 1 0 G1 263764 environmental samples 0.00 1 1 S 263765 uncultured Tolumonas sp. 0.00 3 0 G 347533 Zobellella 0.00 3 3 S 347534 Zobellella denitrificans 0.00 1 0 F 83763 Succinivibrionaceae 0.00 1 0 G 83770 Succinivibrio 0.00 1 1 S 83771 Succinivibrio dextrinosolvens 0.67 775 0 O 72274 Pseudomonadales 0.65 753 25 F 135621 Pseudomonadaceae 0.60 699 193 G 286 Pseudomonas 0.14 161 0 G1 136845 Pseudomonas putida group 0.13 152 152 S 303 Pseudomonas putida 0.00 5 5 S 78327 Pseudomonas mosselii 0.00 4 4 S 76759 Pseudomonas monteilii 0.12 138 0 G1 136841 Pseudomonas aeruginosa group 0.12 138 138 S 287 Pseudomonas aeruginosa 0.11 122 4 G1 196821 unclassified Pseudomonas 0.08 95 95 S 2025658 Pseudomonas sp. NS1(2017) 0.01 9 9 S 1357074 Pseudomonas sp. LS44 0.00 3 3 S 2931382 Pseudomonas sp. PIA16 0.00 3 3 S 2986927 Pseudomonas sp. BT-42-2 0.00 2 2 S 1855380 Pseudomonas sp. Z003-0.4C(8344-21) 0.00 2 2 S 2954088 Pseudomonas sp. FP2262 0.00 1 1 S 2954086 Pseudomonas sp. FP2196 0.00 1 1 S 2762896 Pseudomonas sp. MPDS 0.00 1 1 S 3137451 Pseudomonas sp. G.S.17 0.00 1 1 S 2871095 Pseudomonas sp. DR48 0.02 23 23 S 1198456 Pseudomonas guguanensis 0.02 23 23 S 1302376 Candidatus Pseudomonas adelgestsugas 0.01 12 0 G1 136843 Pseudomonas fluorescens group 0.01 8 0 S 47883 Pseudomonas synxantha 0.01 8 8 S1 96901 Pseudomonas synxantha BG33R 0.00 4 4 S 47878 Pseudomonas azotoformans 0.01 6 6 S 437900 Pseudomonas marincola 0.00 5 5 S 321846 Pseudomonas simiae 0.00 4 4 S 2599595 Pseudomonas eucalypticola 0.00 3 3 S 2738125 Pseudomonas hefeiensis 0.00 3 3 S 158627 Pseudomonas graminis 0.00 2 2 S 46677 Pseudomonas agarici 0.00 2 0 G1 136842 Pseudomonas chlororaphis group 0.00 2 2 S 380021 Pseudomonas protegens 0.00 1 1 S 2842346 Pseudomonas siliginis 0.00 1 1 S 104087 Pseudomonas frederiksbergensis 0.02 25 0 G 2901164 Stutzerimonas 0.02 25 0 G1 136846 Stutzerimonas stutzeri group 0.02 21 21 S 74829 Stutzerimonas balearica 0.00 4 0 G2 578833 Stutzerimonas stutzeri subgroup 0.00 4 4 S 316 Stutzerimonas stutzeri 0.00 3 0 G 1654787 Thiopseudomonas 0.00 3 3 S 1697053 Thiopseudomonas alkaliphila 0.00 1 0 G 2758906 Entomomonas 0.00 1 1 S 2213226 Entomomonas moraniae 0.01 15 0 F 2887365 Marinobacteraceae 0.01 15 15 G 2742 Marinobacter 0.01 6 0 F 3085096 Ketobacteraceae 0.01 6 0 G 2025617 Ketobacter 0.01 6 6 S 1917421 Ketobacter alkanivorans 0.00 1 0 F 3085095 Pseudohongiellaceae 0.00 1 0 G 1524249 Pseudohongiella 0.00 1 1 S 1249552 Pseudohongiella spirulinae 0.65 751 7 O 135622 Alteromonadales 0.24 281 0 F 267888 Pseudoalteromonadaceae 0.21 241 0 G 2834759 Flocculibacter 0.21 241 241 S 2744479 Flocculibacter collagenilyticus 0.03 40 0 G 53246 Pseudoalteromonas 0.03 39 0 G1 194690 unclassified Pseudoalteromonas 0.03 34 34 S 2785910 Pseudoalteromonas sp. A41-2 0.00 5 5 S 649161 Pseudoalteromonas sp. 3J6 0.00 1 1 S 882626 Pseudoalteromonas xiamenensis 0.20 233 2 F 267890 Shewanellaceae 0.20 229 52 G 22 Shewanella 0.08 90 90 S 62322 Shewanella baltica 0.03 38 38 S 2018305 Shewanella bicestrii 0.02 28 28 S 712036 Shewanella dokdonensis 0.02 19 14 G1 196818 unclassified Shewanella 0.00 4 4 S 2601269 Shewanella sp. YLB-09 0.00 1 1 S 2746932 Shewanella sp. MTB7 0.00 2 2 S 2520507 Shewanella maritima 0.00 2 0 G 2547964 Parashewanella 0.00 2 2 S 342950 Parashewanella spongiae 0.20 228 2 F 72275 Alteromonadaceae 0.19 223 0 F1 2903219 Alteromonas/Salinimonas group 0.19 223 0 G 226 Alteromonas 0.19 223 0 G1 2614992 unclassified Alteromonas 0.19 223 223 S 2267264 Alteromonas sp. RKMC-009 0.00 2 2 G 261825 Agarivorans 0.00 1 0 G 2894574 Saccharobesus 0.00 1 1 S 2172099 Saccharobesus litoralis 0.00 1 0 F 267891 Moritellaceae 0.00 1 0 G 58050 Moritella 0.00 1 0 S 90736 Moritella marina 0.00 1 1 S1 1202962 Moritella marina ATCC 15381 0.00 1 0 F 267892 Ferrimonadaceae 0.00 1 1 G 44011 Ferrimonas 0.41 474 1 C1 118884 Gammaproteobacteria incertae sedis 0.40 461 0 G 1076625 Candidatus Steffania 0.40 461 461 S 1076626 Candidatus Steffania adelgidicola 0.01 6 0 G 198346 Candidatus Palibaumannia 0.01 6 6 S 186490 Candidatus Palibaumannia cicadellinicola 0.00 4 0 C2 32036 sulfur-oxidizing symbionts 0.00 4 0 G 1541743 Candidatus Ruthturnera 0.00 4 4 S 2738852 Candidatus Ruthia endofausta 0.00 1 0 F 412032 Celerinatantimonadaceae 0.00 1 0 G 412033 Celerinatantimonas 0.00 1 1 S 412034 Celerinatantimonas diazotrophica 0.00 1 0 G 2738850 Candidatus Reidiella 0.00 1 1 S 2738883 Candidatus Reidiella endopervernicosa 0.22 256 0 O 135613 Chromatiales 0.20 228 0 F 1046 Chromatiaceae 0.09 105 1 G 85072 Allochromatium 0.09 104 104 S 553982 Allochromatium tepidum 0.05 54 0 G 156885 Thioflavicoccus 0.05 54 0 S 80679 Thioflavicoccus mobilis 0.05 54 54 S1 765912 Thioflavicoccus mobilis 8321 0.02 23 23 G 61593 Thiorhodovibrio 0.01 14 14 G 2796146 Candidatus Nitrosacidococcus 0.01 11 0 G 67575 Rheinheimera 0.01 11 0 G1 115860 unclassified Rheinheimera 0.01 8 8 S 3019969 Rheinheimera sp. MM224 0.00 3 3 S 1763998 Rheinheimera sp. F8 0.01 10 10 G 1056 Thiocapsa 0.01 8 0 G 2828366 Caldichromatium 0.01 8 8 S 2699430 Caldichromatium japonicum 0.00 2 0 G 85073 Thermochromatium 0.00 2 0 S 1050 Thermochromatium tepidum 0.00 2 2 S1 316276 Thermochromatium tepidum ATCC 43061 0.00 1 0 G 85076 Marichromatium 0.00 1 0 S 37487 Marichromatium purpuratum 0.00 1 1 S1 765910 Marichromatium purpuratum 984 0.02 28 0 F 72276 Ectothiorhodospiraceae 0.01 15 0 G 233099 Ectothiorhodosinus 0.01 15 15 S 233100 Ectothiorhodosinus mongolicus 0.01 11 2 G 1335745 Spiribacter 0.01 7 0 G1 2629425 unclassified Spiribacter 0.01 7 7 S 2666185 Spiribacter sp. 2438 0.00 2 2 S 2182432 Spiribacter halobius 0.00 1 0 G 133193 Alkalilimnicola 0.00 1 0 S 351052 Alkalilimnicola ehrlichii 0.00 1 1 S1 187272 Alkalilimnicola ehrlichii MLHE-1 0.00 1 1 G 1765964 Acidihalobacter 0.20 233 4 O 135619 Oceanospirillales 0.16 184 0 F 135620 Oceanospirillaceae 0.10 121 0 G 459520 Neptuniibacter 0.10 121 121 S 651666 Neptuniibacter halophilus 0.04 45 0 G 28253 Marinomonas 0.04 45 45 S 2773454 Marinomonas algicola 0.01 16 16 G 515417 Amphritea 0.00 1 0 G 187492 Thalassolituus 0.00 1 1 S 187493 Thalassolituus oleivorans 0.00 1 0 G 267849 Nitrincola 0.00 1 1 S 2614693 Nitrincola iocasae 0.02 26 1 F 28256 Halomonadaceae 0.01 13 0 F1 114403 Zymobacter group 0.01 12 0 G 235572 Candidatus Portiera 0.01 12 12 S 91844 Candidatus Portiera aleyrodidarum 0.00 1 0 G 114185 Candidatus Carsonella 0.00 1 1 S 114186 Candidatus Carsonella ruddii 0.01 9 9 G 404432 Salinicola 0.00 3 0 G 2745 Halomonas 0.00 3 3 G1 2609666 unclassified Halomonas 0.01 12 0 F 2823145 Pleioneaceae 0.01 12 0 G 1502941 Pleionea 0.01 12 12 S 3070815 Pleionea litopenaei 0.00 4 0 F 224379 Hahellaceae 0.00 4 4 G 158481 Hahella 0.00 3 0 F 449732 Litorivicinaceae 0.00 3 0 G 418700 Litorivicinus 0.00 3 3 S 418701 Litorivicinus lipolyticus 0.12 137 0 O 135614 Lysobacterales 0.12 134 2 F 32033 Lysobacteraceae 0.11 127 0 G 338 Xanthomonas 0.11 127 127 S 29447 Xanthomonas albilineans 0.00 2 1 G 83618 Pseudoxanthomonas 0.00 1 0 G1 2645906 unclassified Pseudoxanthomonas 0.00 1 1 S 2969308 Pseudoxanthomonas sp. JBR18 0.00 1 1 G 68 Lysobacter 0.00 1 0 G 83614 Luteimonas 0.00 1 1 S 2565782 Luteimonas yindakuii 0.00 1 0 G 2709666 Pseudolysobacter 0.00 1 1 S 2511995 Pseudolysobacter antarcticus 0.00 3 1 F 1775411 Rhodanobacteraceae 0.00 2 2 G 231454 Dyella 0.06 66 0 O 118969 Legionellales 0.04 41 0 F 444 Legionellaceae 0.04 41 0 G 445 Legionella 0.03 29 0 S 446 Legionella pneumophila 0.03 29 27 S1 91891 Legionella pneumophila subsp. pneumophila 0.00 2 2 S2 272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 0.01 12 12 S 450 Legionella longbeachae 0.02 25 13 F 118968 Coxiellaceae 0.01 9 1 G 254245 Aquicella 0.01 8 8 S 254247 Aquicella siphonis 0.00 3 2 G 59195 Rickettsiella 0.00 1 1 G1 2637345 unclassified Rickettsiella 0.05 55 1 O 72273 Thiotrichales 0.04 41 14 F 135616 Piscirickettsiaceae 0.01 12 2 G 933 Thiomicrospira 0.01 6 0 G1 2643099 unclassified Thiomicrospira 0.01 6 6 S 3035472 Thiomicrospira sp. R3 0.00 4 0 S 92245 Thiomicrospira aerophila 0.00 4 4 S1 717772 Thiomicrospira aerophila AL3 0.01 9 0 G 2781121 Thiosulfatimonas 0.01 9 9 S 2675054 Thiosulfatimonas sediminis 0.00 5 5 G 2039723 Thiomicrorhabdus 0.00 1 0 G 1237 Piscirickettsia 0.00 1 1 S 1238 Piscirickettsia salmonis 0.01 11 0 F 135617 Thiotrichaceae 0.01 6 0 G 1021 Beggiatoa 0.01 6 6 S 288004 Beggiatoa leptomitoformis 0.00 5 3 G 1030 Thiothrix 0.00 2 2 S 525917 Thiothrix lacustris 0.00 1 0 F 34064 Francisellaceae 0.00 1 1 G 262 Francisella 0.00 1 0 F 2056687 Fastidiosibacteraceae 0.00 1 0 G 2056696 Cysteiniphilum 0.00 1 0 G1 2610889 unclassified Cysteiniphilum 0.00 1 1 S 2975055 Cysteiniphilum sp. QT6929 0.04 42 0 O 1706369 Cellvibrionales 0.01 14 0 F 1706373 Microbulbiferaceae 0.01 14 0 G 48073 Microbulbifer 0.01 12 12 S 86173 Microbulbifer elongatus 0.00 2 0 G1 2619833 unclassified Microbulbifer 0.00 1 1 S 2745199 Microbulbifer sp. YPW1 0.00 1 1 S 2944933 Microbulbifer sp. MI-G 0.01 13 0 F 1706375 Spongiibacteraceae 0.01 13 0 G 1084558 Oceanicoccus 0.01 13 13 S 716816 Oceanicoccus sagamiensis 0.01 11 8 F 1706372 Halieaceae 0.00 2 0 G 3040948 Candidatus Paraluminiphilus 0.00 2 2 S 2518994 Candidatus Paraluminiphilus aquimaris 0.00 1 0 G 2847769 Aequoribacter 0.00 1 1 S 2518989 Aequoribacter fuscus 0.00 4 0 F 1706371 Cellvibrionaceae 0.00 4 0 G 10 Cellvibrio 0.00 4 1 G1 2624793 unclassified Cellvibrio 0.00 3 3 S 1987723 Cellvibrio sp. PSBB006 0.03 36 0 O 3084968 Thiohalomonadales 0.03 36 0 F 3084969 Thiohalomonadaceae 0.03 36 0 G 2034504 Sulfurivermis 0.03 36 36 S 1972068 Sulfurivermis fontis 0.02 26 0 O 135615 Cardiobacteriales 0.02 22 0 F 868 Cardiobacteriaceae 0.01 11 0 G 869 Dichelobacter 0.01 11 11 S 870 Dichelobacter nodosus 0.01 11 0 G 2717 Cardiobacterium 0.01 10 0 G1 2648856 unclassified Cardiobacterium 0.01 10 10 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.00 1 1 S 2718 Cardiobacterium hominis 0.00 4 0 F 3018589 Ignatzschineriaceae 0.00 2 2 G 112008 Ignatzschineria 0.00 2 0 G 582472 Wohlfahrtiimonas 0.00 2 2 S 400946 Wohlfahrtiimonas chitiniclastica 0.01 12 0 O 1240482 Orbales 0.01 12 0 F 1240483 Orbaceae 0.01 12 0 G 2894762 Zophobihabitans 0.01 12 12 S 1635327 Zophobihabitans entericus 0.01 11 0 O 135618 Methylococcales 0.01 11 0 F 403 Methylococcaceae 0.00 4 0 G 3135206 Candidatus Methylocalor 0.00 4 4 S 3108543 Candidatus Methylocalor cossyra 0.00 3 0 G 73778 Methylocaldum 0.00 2 2 S 73780 Methylocaldum szegediense 0.00 1 1 S 1432792 Methylocaldum marinum 0.00 2 1 G 413 Methylococcus 0.00 1 1 S 2993564 Methylococcus mesophilus 0.00 1 1 G 416 Methylomonas 0.00 1 0 G 1808977 Candidatus Methylospira 0.00 1 1 S 1808979 Candidatus Methylospira mobilis 0.00 1 0 O 2975284 Candidatus Comchoanobacterales 0.00 1 0 F 2975285 Candidatus Comchoanobacteraceae 0.00 1 0 G 2975286 Candidatus Comchoanobacter 0.00 1 1 S 2919598 Candidatus Comchoanobacter bicostacola 3.16 3646 51 C 28211 Alphaproteobacteria 1.69 1956 9 O 204457 Sphingomonadales 1.64 1900 73 F 41297 Sphingomonadaceae 1.49 1720 576 G 165696 Novosphingobium 0.87 1010 1010 S 13688 Novosphingobium capsulatum 0.11 122 122 S 2728851 Novosphingobium olei 0.01 9 4 G1 2644732 unclassified Novosphingobium 0.00 3 3 S 3079861 Novosphingobium sp. ZN18A2 0.00 1 1 S 1609758 Novosphingobium sp. P6W 0.00 1 1 S 3109595 Novosphingobium sp. RL4 0.00 3 3 S 2698673 Novosphingobium decolorationis 0.08 98 52 G 13687 Sphingomonas 0.03 37 37 S 2698679 Sphingomonas changnyeongensis 0.00 5 0 G1 196159 unclassified Sphingomonas 0.00 3 3 S 3062169 Sphingomonas sp. C3-2 0.00 1 1 S 745310 Sphingomonas sp. MM-1 0.00 1 1 S 3078265 Sphingomonas sp. Y38-1Y 0.00 2 2 S 3132797 Sphingomonas flavescens 0.00 1 1 S 13689 Sphingomonas paucimobilis 0.00 1 1 S 2681549 Sphingomonas profundi 0.00 3 2 G 1227948 Sphingomicrobium 0.00 1 1 S 1582356 Sphingomicrobium aestuariivivum 0.00 2 0 G 165695 Sphingobium 0.00 2 0 G1 2611147 unclassified Sphingobium 0.00 2 2 S 627192 Sphingobium sp. SYK-6 0.00 2 0 G 1434046 Sphingorhabdus 0.00 2 2 S 1913578 Sphingorhabdus lutea 0.00 1 1 G 165697 Sphingopyxis 0.00 1 0 G 2709685 Parasphingorhabdus 0.00 1 0 S 394733 Parasphingorhabdus litoris 0.00 1 1 S1 1123271 Parasphingorhabdus litoris DSM 22379 0.03 32 2 F 335929 Erythrobacteraceae 0.02 23 22 G 2800681 Aurantiacibacter 0.00 1 0 G1 2800693 unclassified Aurantiacibacter 0.00 1 1 S 3009083 Aurantiacibacter sp. MUD61 0.00 3 0 F1 2800788 Erythrobacter/Porphyrobacter group 0.00 2 0 G 1111 Porphyrobacter 0.00 2 0 G1 2683265 unclassified Porphyrobacter 0.00 2 2 S 2003315 Porphyrobacter sp. CACIAM 03H1 0.00 1 0 G 1041 Erythrobacter 0.00 1 0 G1 2633097 unclassified Erythrobacter 0.00 1 1 S 2502843 Erythrobacter sp. HKB08 0.00 2 0 G 2676755 Croceibacterium 0.00 2 0 G1 2676756 unclassified Croceibacterium 0.00 2 2 S 3121290 Croceibacterium sp. TMG7-5b_MA50 0.00 1 0 G 361177 Altererythrobacter 0.00 1 0 G1 2614945 unclassified Altererythrobacter 0.00 1 1 S 2060312 Altererythrobacter sp. B11 0.00 1 0 G 2800682 Paraurantiacibacter 0.00 1 1 S 645517 Paraurantiacibacter namhicola 0.01 9 0 F 2820280 Sphingosinicellaceae 0.01 7 0 G 2883109 Sandaracinobacteroides 0.01 7 7 S 2759707 Sandaracinobacteroides saxicola 0.00 2 0 G 335405 Sphingosinicella 0.00 2 0 G1 2644549 unclassified Sphingosinicella 0.00 2 2 S 1892855 Sphingosinicella sp. BN140058 0.01 6 0 F 2844881 Zymomonadaceae 0.01 6 0 G 541 Zymomonas 0.01 6 6 S 542 Zymomonas mobilis 0.69 800 25 O 356 Hyphomicrobiales 0.27 309 0 F 118882 Brucellaceae 0.27 309 280 F1 2826938 Brucella/Ochrobactrum group 0.03 29 14 G 234 Brucella 0.01 6 1 S 29459 Brucella melitensis 0.00 5 0 S1 645169 Brucella melitensis bv. 2 0.00 5 5 S2 520465 Brucella melitensis bv. 2 str. 63/9 0.01 6 6 S 94625 Brucella intermedia 0.00 2 0 G1 2632610 unclassified Brucella 0.00 2 2 S 2886044 Brucella sp. JSBI001 0.00 1 0 S 235 Brucella abortus 0.00 1 0 S1 1567505 Brucella abortus bv. 9 0.00 1 1 S2 520455 Brucella abortus bv. 9 str. C68 0.15 178 9 F 119045 Methylobacteriaceae 0.14 158 96 G 407 Methylobacterium 0.02 27 27 S 570505 Methylobacterium bullatum 0.01 16 16 S 1775910 Methylobacterium indicum 0.01 12 0 S 31998 Methylobacterium radiotolerans 0.01 12 12 S1 426355 Methylobacterium radiotolerans JCM 2831 0.00 4 0 G1 2615210 unclassified Methylobacterium 0.00 3 3 S 426117 Methylobacterium sp. 4-46 0.00 1 1 S 2202826 Methylobacterium sp. 17Sr1-1 0.00 2 2 S 410 Methylobacterium organophilum 0.00 1 1 S 269660 Methylobacterium brachiatum 0.01 11 11 G 186650 Microvirga 0.08 98 0 F 2813035 Parvibaculaceae 0.07 79 0 G 256616 Parvibaculum 0.07 79 0 S 256618 Parvibaculum lavamentivorans 0.07 79 79 S1 402881 Parvibaculum lavamentivorans DS-1 0.02 18 0 G 2838250 Kaustia 0.02 18 18 S 2593653 Kaustia mangrovi 0.00 1 0 G 444432 Anderseniella 0.00 1 0 G1 2614933 unclassified Anderseniella 0.00 1 1 S 1922226 Anderseniella sp. Alg231-50 0.05 62 1 F 82115 Rhizobiaceae 0.03 35 24 F1 227290 Rhizobium/Agrobacterium group 0.01 11 1 G 379 Rhizobium 0.01 8 0 S 56730 Rhizobium gallicum 0.01 8 0 S1 142627 Rhizobium gallicum bv. gallicum 0.01 8 8 S2 1041138 Rhizobium gallicum bv. gallicum R602sp 0.00 2 0 G1 2613769 unclassified Rhizobium 0.00 2 2 S 2926709 Rhizobium sp. CC-CFT758 0.02 21 0 F1 227292 Sinorhizobium/Ensifer group 0.02 21 0 G 28105 Sinorhizobium 0.02 20 3 S 382 Sinorhizobium meliloti 0.01 17 17 S1 1041157 Sinorhizobium meliloti WSM1022 0.00 1 1 S 110322 Sinorhizobium terangae 0.00 3 1 G 34019 Liberibacter 0.00 2 2 S 34021 Candidatus Liberibacter asiaticus 0.00 2 2 G 323620 Shinella 0.03 36 0 F 69277 Phyllobacteriaceae 0.02 27 0 G 68287 Mesorhizobium 0.02 25 25 S 2725666 Mesorhizobium terrae 0.00 2 0 G1 325217 unclassified Mesorhizobium 0.00 2 2 S 2584466 Mesorhizobium sp. 8 0.01 9 0 G 2911176 Aquibium 0.01 9 9 S 1670800 Aquibium oceanicum 0.02 23 0 F 335928 Xanthobacteraceae 0.01 14 0 G 556257 Pseudolabrys 0.01 14 0 G1 2638514 unclassified Pseudolabrys 0.01 14 14 S 2562284 Pseudolabrys sp. FHR47 0.01 8 0 G 204476 Labrys 0.01 8 0 G1 2688601 unclassified Labrys (in: a-proteobacteria) 0.01 8 8 S 2789216 Labrys sp. KNU-23 0.00 1 0 G 279 Xanthobacter 0.00 1 1 S 2528964 Xanthobacter dioxanivorans 0.02 22 3 F 41294 Nitrobacteraceae 0.01 16 0 G 911 Nitrobacter 0.01 16 0 S 912 Nitrobacter hamburgensis 0.01 16 16 S1 323097 Nitrobacter hamburgensis X14 0.00 2 0 G 1073 Rhodopseudomonas 0.00 1 1 S 1076 Rhodopseudomonas palustris 0.00 1 0 G1 2638247 unclassified Rhodopseudomonas 0.00 1 1 S 2991972 Rhodopseudomonas sp. P2A-2r 0.00 1 1 G 374 Bradyrhizobium 0.02 20 0 O1 119042 Hyphomicrobiales incertae sedis 0.01 17 0 G 2874214 Terrihabitans 0.01 17 17 S 708113 Terrihabitans soli 0.00 2 0 G 169055 Nordella 0.00 2 0 G1 2623691 unclassified Nordella 0.00 2 2 S 2712222 Nordella sp. HKS 07 0.00 1 0 G 212791 Enhydrobacter 0.00 1 0 G1 2632691 unclassified Enhydrobacter 0.00 1 1 S 1894999 Enhydrobacter sp. 0.01 12 0 F 2831111 Kaistiaceae 0.01 12 0 G 166953 Kaistia 0.01 12 0 G1 2649303 unclassified Kaistia 0.01 12 12 S 2795690 Kaistia sp. 32K 0.00 4 0 F 2831106 Devosiaceae 0.00 4 3 G 46913 Devosia 0.00 1 1 G1 196773 unclassified Devosia 0.00 4 0 F 45401 Hyphomicrobiaceae 0.00 4 0 G 1484898 Methyloceanibacter 0.00 4 0 G1 2617503 unclassified Methyloceanibacter 0.00 4 4 S 2170729 Methyloceanibacter sp. wino2 0.00 3 0 F 772 Bartonellaceae 0.00 3 0 G 773 Bartonella 0.00 2 2 S 803 Bartonella quintana 0.00 1 0 G1 2645622 unclassified Bartonella 0.00 1 1 S 1933904 Bartonella sp. WD16.2 0.00 2 0 F 2821832 Stappiaceae 0.00 2 0 G 150830 Roseibium 0.00 2 0 G1 1936170 environmental samples 0.00 2 2 S 1936171 uncultured Roseibium sp. 0.00 1 1 F 255475 Aurantimonadaceae 0.00 1 0 F 2036754 Chelatococcaceae 0.00 1 1 G 28209 Chelatococcus 0.29 334 3 O 204455 Rhodobacterales 0.28 324 31 F 31989 Paracoccaceae 0.15 172 0 G 204456 Gemmobacter 0.15 172 172 S 2840474 Gemmobacter fulvus 0.09 100 22 G 265 Paracoccus 0.06 71 71 S 659350 Paracoccus stylophorae 0.00 3 0 S 34003 Paracoccus aminophilus 0.00 3 3 S1 1367847 Paracoccus aminophilus JCM 7686 0.00 2 0 G1 2688777 unclassified Paracoccus (in: a-proteobacteria) 0.00 2 2 S 3030011 Paracoccus sp. S3-43 0.00 2 2 S 2259340 Paracoccus suum 0.00 3 0 G 34008 Rhodovulum 0.00 3 0 G1 2631432 unclassified Rhodovulum 0.00 3 3 S 1564506 Rhodovulum sp. P5 0.00 3 0 G 238783 Pseudorhodobacter 0.00 3 3 S 2500533 Pseudorhodobacter turbinis 0.00 3 0 G 2683599 Paroceanicella 0.00 3 3 S 2579971 Paroceanicella profunda 0.00 2 0 G 285107 Thioclava 0.00 2 2 S 1549850 Thioclava electrotropha 0.00 2 0 G 2831955 Pikeienuella 0.00 2 2 S 2748098 Pikeienuella piscinae 0.00 2 0 G 2946607 Neotabrizicola 0.00 2 2 S 2807096 Neotabrizicola shimadae 0.00 1 0 G 2211641 Yoonia 0.00 1 0 G1 2629118 unclassified Yoonia 0.00 1 1 S 3137368 Yoonia sp. G8-12 0.00 1 0 G 1775705 Frigidibacter 0.00 1 1 S 1335048 Frigidibacter mobilis 0.00 1 0 G 2778525 Profundibacter 0.00 1 1 S 2171755 Profundibacter amoris 0.00 1 0 G 3029205 Abyssibius 0.00 1 1 S 2881234 Abyssibius alkaniclasticus 0.00 1 0 G 366614 Haematobacter 0.00 1 1 S 195105 Haematobacter massiliensis 0.00 1 0 G 3050722 Algicella 0.00 1 1 S 2683284 Algicella marina 0.01 7 0 F 2854170 Roseobacteraceae 0.00 4 0 G 315422 Palleronia 0.00 4 0 G1 2614920 unclassified Palleronia 0.00 4 4 S 3079304 Palleronia sp. LCG004 0.00 2 2 G 74030 Roseovarius 0.00 1 0 G 875170 Celeribacter 0.00 1 1 S 875171 Celeribacter baekdonensis 0.19 214 0 O 204458 Caulobacterales 0.19 214 3 F 76892 Caulobacteraceae 0.16 187 70 G 41275 Brevundimonas 0.10 114 0 G1 2622653 unclassified Brevundimonas 0.09 108 108 S 2591463 Brevundimonas sp. M20 0.00 5 5 S 2560058 Brevundimonas sp. Bb-A 0.00 1 1 S 1827469 Brevundimonas sp. GW460-12-10-14-LB2 0.00 1 1 S 293 Brevundimonas diminuta 0.00 1 1 S 13160 Brevundimonas bullata 0.00 1 0 G1 114552 environmental samples 0.00 1 1 S 213418 uncultured Brevundimonas sp. 0.02 23 4 G 20 Phenylobacterium 0.02 19 0 S 284016 Phenylobacterium zucineum 0.02 19 19 S1 450851 Phenylobacterium zucineum HLK1 0.00 1 0 G 75 Caulobacter 0.00 1 0 G1 2648921 unclassified Caulobacter 0.00 1 1 S 3015996 Caulobacter sp. NIBR2454 0.18 204 0 O 204441 Rhodospirillales 0.14 162 0 F 2844601 Stellaceae 0.14 162 0 G 93 Stella 0.14 162 162 S 94 Stella humosa 0.03 34 0 F 2690195 Elioraeaceae 0.03 34 0 G 457933 Elioraea 0.03 34 34 S 2843330 Elioraea tepida 0.01 6 0 F 41295 Rhodospirillaceae 0.00 5 0 G 1263978 Candidatus Endolissoclinum 0.00 5 5 S 1263979 Candidatus Endolissoclinum faulkneri 0.00 1 0 G 111830 Defluviicoccus 0.00 1 1 S 111831 Defluviicoccus vanus 0.00 2 0 F 433 Acetobacteraceae 0.00 2 0 G 512381 Acidisoma 0.00 2 0 G1 2634065 unclassified Acidisoma 0.00 2 2 S 3040935 Acidisoma sp. PAMC 29798 0.04 51 0 O 2800060 Hyphomonadales 0.04 51 0 F 69657 Hyphomonadaceae 0.04 51 51 G 85 Hyphomonas 0.02 18 0 O 2066490 Emcibacterales 0.02 18 0 F 2066491 Emcibacteraceae 0.02 18 0 G 2943291 Pseudemcibacter 0.02 18 18 S 2857064 Pseudemcibacter aquimaris 0.01 8 0 O 766 Rickettsiales 0.01 6 0 F 775 Rickettsiaceae 0.01 6 0 F1 33988 Rickettsieae 0.01 6 0 G 780 Rickettsia 0.01 6 0 G1 114277 spotted fever group 0.01 6 0 S 781 Rickettsia conorii 0.01 6 6 S1 369822 Rickettsia conorii subsp. raoultii 0.00 1 0 F 942 Anaplasmataceae 0.00 1 0 G 33993 Neorickettsia 0.00 1 0 S 33994 Neorickettsia helminthoeca 0.00 1 1 S1 1286528 Neorickettsia helminthoeca str. Oregon 0.00 1 0 O1 1699067 unclassified Rickettsiales 0.00 1 1 S 2486578 Rickettsiales endosymbiont of Stachyamoeba lipophora 0.00 5 0 O 1921002 Holosporales 0.00 4 0 F 44746 Holosporaceae 0.00 4 0 G 2654634 Candidatus Hydrogenosomobacter 0.00 4 4 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.00 1 0 F 1777752 Candidatus Paracaedibacteraceae 0.00 1 0 G 3163645 Candidatus Bodocaedibacter 0.00 1 1 S 2741701 Candidatus Bodocaedibacter vickermanii 0.00 2 2 O 362534 Kordiimonadales 0.00 2 0 O 54526 Candidatus Pelagibacterales 0.00 2 0 O1 2813274 Candidatus Pelagibacterales incertae sedis 0.00 2 0 G 2045213 Candidatus Fonsibacter 0.00 2 2 S 1925548 Candidatus Fonsibacter ubiquis 0.00 1 0 O 2800059 Maricaulales 0.00 1 1 F 2800061 Maricaulaceae 1.34 1548 491 C 28216 Betaproteobacteria 0.82 943 65 O 80840 Burkholderiales 0.42 480 17 F 80864 Comamonadaceae 0.36 411 407 G 80865 Delftia 0.00 3 3 S 180282 Delftia tsuruhatensis 0.00 1 1 S 558537 Delftia lacustris 0.03 31 17 G 283 Comamonas 0.01 6 6 S 2743470 Comamonas antarctica 0.00 5 5 S 379895 Comamonas odontotermitis 0.00 1 1 S 363952 Comamonas thiooxydans 0.00 1 0 G1 2638500 unclassified Comamonas 0.00 1 1 S 2918299 Comamonas sp. B21-038 0.00 1 1 S 2949090 Comamonas endophytica 0.01 10 0 G 34072 Variovorax 0.01 10 0 G1 663243 unclassified Variovorax 0.01 10 10 S 1795631 Variovorax sp. PAMC 28711 0.00 4 0 G 1436289 Candidatus Symbiobacter 0.00 4 0 S 1436290 Candidatus Symbiobacter mobilis 0.00 4 4 S1 946483 Candidatus Symbiobacter mobilis CR 0.00 3 3 G 28065 Rhodoferax 0.00 3 0 G 174951 Ramlibacter 0.00 3 3 S 94132 Ramlibacter tataouinensis 0.00 1 0 G 2919468 Vandammella 0.00 1 1 S 2029117 Vandammella animalimorsus 0.20 232 4 F 119060 Burkholderiaceae 0.07 82 11 G 48736 Ralstonia 0.06 70 0 G1 3116862 Ralstonia solanacearum species complex 0.06 70 70 S 305 Ralstonia solanacearum 0.00 1 0 G1 209769 unclassified Ralstonia 0.00 1 1 S 3231757 Ralstonia sp. CP 0.05 62 15 G 32008 Burkholderia 0.02 26 0 G1 111527 pseudomallei group 0.01 15 0 S 57975 Burkholderia thailandensis 0.01 15 15 S1 1249664 Burkholderia thailandensis 34 0.01 11 11 S 28450 Burkholderia pseudomallei 0.02 19 0 G1 87882 Burkholderia cepacia complex 0.02 18 18 S 488447 Burkholderia contaminans 0.00 1 0 S 101571 Burkholderia ubonensis 0.00 1 1 S1 1249668 Burkholderia ubonensis MSMB22 0.00 2 0 G1 2613784 unclassified Burkholderia 0.00 2 2 S 1494466 Burkholderia sp. FERM BP-3421 0.02 27 0 G 2038280 Robbsia 0.02 27 0 G1 2636574 unclassified Robbsia 0.02 27 27 S 3149231 Robbsia sp. KACC 23696 0.02 24 0 G 106589 Cupriavidus 0.02 21 21 S 164546 Cupriavidus taiwanensis 0.00 2 2 S 119219 Cupriavidus metallidurans 0.00 1 1 S 367825 Cupriavidus malaysiensis 0.02 18 1 G 1822464 Paraburkholderia 0.01 17 17 S 2571748 Paraburkholderia acidisoli 0.01 11 0 G 2571159 Mycetohabitans 0.01 11 11 S 417203 Mycetohabitans endofungorum 0.00 2 0 G 47670 Lautropia 0.00 2 2 S 47671 Lautropia mirabilis 0.00 1 1 G 93217 Pandoraea 0.00 1 1 G 1810868 Mycoavidus 0.09 101 1 F 506 Alcaligenaceae 0.08 90 0 G 290425 Advenella 0.08 90 90 S 1481665 Advenella alkanexedens 0.01 8 0 G 1472344 Basilea 0.01 8 0 S 1472345 Basilea psittacipulmonis 0.01 8 8 S1 1072685 Basilea psittacipulmonis DSM 24701 0.00 1 0 G 152267 Pigmentiphaga 0.00 1 1 S 1940612 Pigmentiphaga aceris 0.00 1 0 G 305976 Pusillimonas 0.00 1 0 G1 2640016 unclassified Pusillimonas 0.00 1 1 S 2716226 Pusillimonas sp. DMV24BSW_D 0.03 29 13 F 75682 Oxalobacteraceae 0.01 6 4 G 963 Herbaspirillum 0.00 2 2 S 863372 Herbaspirillum huttiense 0.01 6 4 F1 2895353 Telluria group 0.00 2 0 G 149698 Massilia 0.00 2 0 G1 2609279 unclassified Massilia 0.00 2 2 S 3126507 Massilia sp. W12 0.00 2 0 G 401469 Undibacterium 0.00 2 0 G1 2630295 unclassified Undibacterium 0.00 2 2 S 3048609 Undibacterium sp. CCC3.4 0.00 1 1 G 29580 Janthinobacterium 0.00 1 0 G 1229970 Glaciimonas 0.00 1 0 G1 2644401 unclassified Glaciimonas 0.00 1 1 S 2807626 Glaciimonas sp. PAMC28666 0.02 26 0 F 2975441 Sphaerotilaceae 0.01 17 0 G 391952 Aquincola 0.01 17 17 S 391953 Aquincola tertiaricarbonis 0.00 4 0 G 34102 Sphaerotilus 0.00 4 4 S 2914710 Sphaerotilus microaerophilus 0.00 2 1 G 93681 Roseateles 0.00 1 0 G1 2626991 unclassified Roseateles 0.00 1 1 S 2877940 Roseateles sp. XES5 0.00 2 0 G 1114981 Piscinibacter 0.00 2 2 S 946333 Piscinibacter gummiphilus 0.00 1 0 G 196013 Caldimonas 0.00 1 1 S 376175 Schlegelella aquatica 0.01 10 0 O1 224471 Burkholderiales genera incertae sedis 0.01 8 8 G 32012 Thiomonas 0.00 2 0 G 114248 Tepidimonas 0.00 2 2 S 307486 Tepidimonas taiwanensis 0.05 59 0 C1 119066 Betaproteobacteria incertae sedis 0.05 52 0 G 1301080 Candidatus Nasuia 0.05 52 52 S 1160784 Candidatus Nasuia deltocephalinicola 0.01 7 0 G 1381133 Candidatus Profftella 0.01 7 7 S 2661583 Candidatus Profftella armatura (Diaphorina cf. continua) 0.04 41 0 O 206351 Neisseriales 0.03 34 12 F 481 Neisseriaceae 0.01 12 0 G 2593687 Aquella 0.01 12 12 S 2067065 Aquella oligotrophica 0.01 8 6 G 482 Neisseria 0.00 2 2 S 487 Neisseria meningitidis 0.00 2 0 G 32257 Kingella 0.00 1 1 S 505 Kingella oralis 0.00 1 1 S 265175 Kingella potus 0.00 4 0 F 2897176 Aquaspirillaceae 0.00 4 0 G 168470 Laribacter 0.00 4 0 S 168471 Laribacter hongkongensis 0.00 4 4 S1 557598 Laribacter hongkongensis HLHK9 0.00 3 3 F 2897177 Chitinibacteraceae 0.01 13 1 O 32003 Nitrosomonadales 0.01 12 2 F 32011 Methylophilaceae 0.01 9 0 G 359407 Methylotenera 0.01 9 0 S 359408 Methylotenera mobilis 0.01 9 9 S1 583345 Methylotenera mobilis JLW8 0.00 1 1 G 16 Methylophilus 0.00 1 0 O 206389 Rhodocyclales 0.00 1 0 F 75787 Rhodocyclaceae 0.00 1 0 G 83766 Propionivibrio 0.00 1 0 G1 334579 environmental samples 0.00 1 1 S 426737 uncultured Propionivibrio sp. 0.02 27 0 C 1807140 Acidithiobacillia 0.02 27 0 O 225057 Acidithiobacillales 0.02 27 0 F 225058 Acidithiobacillaceae 0.02 27 27 G 119977 Acidithiobacillus 12.39 14320 29 D1 1783272 Terrabacteria group 11.69 13505 42 P 1239 Bacillota 11.54 13329 159 C 91061 Bacilli 10.42 12043 7 O 186826 Lactobacillales 10.23 11818 0 F 81852 Enterococcaceae 10.23 11818 9 G 1350 Enterococcus 10.19 11774 11774 S 1351 Enterococcus faecalis 0.02 28 28 S 1352 Enterococcus faecium 0.00 3 3 S 1354 Enterococcus hirae 0.00 2 2 S 417368 Enterococcus thailandicus 0.00 1 0 G1 2608891 unclassified Enterococcus 0.00 1 1 S 2230877 Enterococcus sp. DIV2402 0.00 1 1 S 44008 Enterococcus cecorum 0.08 91 7 F 33958 Lactobacillaceae 0.04 49 2 G 1578 Lactobacillus 0.04 44 41 S 1584 Lactobacillus delbrueckii 0.00 3 2 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.00 1 1 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.00 2 0 G1 2620435 unclassified Lactobacillus 0.00 1 1 S 2983232 Lactobacillus sp. ESL0785 0.00 1 1 S 2695882 Lactobacillus sp. 3B(2020) 0.00 1 1 S 83683 Lactobacillus amylolyticus 0.01 7 6 G 46255 Weissella 0.00 1 1 S 1249 Weissella paramesenteroides 0.00 4 0 G 2767887 Ligilactobacillus 0.00 2 0 S 1622 Ligilactobacillus murinus 0.00 2 2 S1 1235801 Ligilactobacillus murinus ASF361 0.00 1 1 S 1624 Ligilactobacillus salivarius 0.00 1 1 S 89059 Ligilactobacillus acidipiscis 0.00 4 0 G 2930384 Periweissella 0.00 4 4 S 2506420 Periweissella cryptocerci 0.00 4 0 G 2759736 Lacticaseibacillus 0.00 2 2 S 1597 Lacticaseibacillus paracasei 0.00 2 2 S 3025672 Lacticaseibacillus pabuli 0.00 3 0 G 2767886 Levilactobacillus 0.00 2 2 S 1580 Levilactobacillus brevis 0.00 1 1 S 267363 Levilactobacillus zymae 0.00 3 1 G 2742598 Limosilactobacillus 0.00 1 1 S 1613 Limosilactobacillus fermentum 0.00 1 1 S 227942 Limosilactobacillus gastricus 0.00 3 0 G 2767842 Lactiplantibacillus 0.00 3 3 S 1589 Lactiplantibacillus pentosus 0.00 3 3 G 2767893 Lentilactobacillus 0.00 1 0 G 2767885 Latilactobacillus 0.00 1 1 S 1599 Latilactobacillus sakei 0.00 1 0 G 2767891 Schleiferilactobacillus 0.00 1 1 S 304207 Schleiferilactobacillus harbinensis 0.00 1 0 G 2767878 Bombilactobacillus 0.00 1 1 S 1303590 Bombilactobacillus bombi 0.00 1 0 G 1243 Leuconostoc 0.00 1 1 S 1246 Leuconostoc lactis 0.05 55 0 F 186827 Aerococcaceae 0.04 50 45 G 1375 Aerococcus 0.00 2 2 S 2976809 Aerococcus loyolae 0.00 1 1 S 87541 Aerococcus christensenii 0.00 1 1 S 128944 Aerococcus urinaehominis 0.00 1 1 S 2976810 Aerococcus mictus 0.00 4 0 G 2862144 Ruoffia 0.00 4 4 S 87458 Ruoffia tabacinasalis 0.00 1 0 G 89092 Ignavigranum 0.00 1 1 S 89093 Ignavigranum ruoffiae 0.04 42 3 F 186828 Carnobacteriaceae 0.03 36 36 G 2747 Carnobacterium 0.00 3 0 G 82800 Desemzia 0.00 3 3 S 82801 Desemzia incerta 0.03 30 0 F 1300 Streptococcaceae 0.02 27 6 G 1301 Streptococcus 0.01 9 6 S 1308 Streptococcus thermophilus 0.00 3 3 S1 322159 Streptococcus thermophilus LMD-9 0.00 3 3 S 1314 Streptococcus pyogenes 0.00 1 1 S 1811193 Streptococcus pantholopis 0.00 1 1 S 1305 Streptococcus sanguinis 0.00 1 1 S 1348 Streptococcus parauberis 0.00 1 1 S 1346 Streptococcus iniae 0.00 1 1 S 1311 Streptococcus agalactiae 0.00 1 1 S 1313 Streptococcus pneumoniae 0.00 1 0 G1 671232 Streptococcus anginosus group 0.00 1 1 S 1328 Streptococcus anginosus 0.00 1 1 S 2021971 Streptococcus respiraculi 0.00 1 1 S 68892 Streptococcus infantis 0.00 3 0 G 1357 Lactococcus 0.00 3 3 S 1359 Lactococcus cremoris 0.98 1127 27 O 1385 Bacillales 0.60 688 53 F 186817 Bacillaceae 0.25 288 2 G 1386 Bacillus 0.16 183 4 G1 653685 Bacillus subtilis group 0.10 119 0 G2 1938374 Bacillus amyloliquefaciens group 0.09 101 99 S 492670 Bacillus velezensis 0.00 1 1 S1 1385727 Bacillus velezensis NAU-B3 0.00 1 1 S1 1458206 Bacillus velezensis NJN-6 0.01 14 14 S 1390 Bacillus amyloliquefaciens 0.00 4 4 S 659243 Bacillus siamensis 0.05 53 51 S 1423 Bacillus subtilis 0.00 1 1 S1 86029 Bacillus subtilis subsp. natto 0.00 1 1 S1 135461 Bacillus subtilis subsp. subtilis 0.00 3 2 S 1452 Bacillus atrophaeus 0.00 1 1 S1 1529886 Bacillus atrophaeus subsp. globigii 0.00 3 3 S 483913 Bacillus inaquosorum 0.00 1 0 G2 653388 Bacillus mojavensis subgroup 0.00 1 1 S 260554 Bacillus halotolerans 0.04 51 3 G1 86661 Bacillus cereus group 0.02 25 25 S 1392 Bacillus anthracis 0.01 13 10 S 1428 Bacillus thuringiensis 0.00 3 3 S1 180850 Bacillus thuringiensis serovar indiana 0.00 5 3 S 1396 Bacillus cereus 0.00 1 1 S1 288681 Bacillus cereus E33L 0.00 1 1 S1 1003239 Bacillus cereus C1L 0.00 3 3 S 2026186 Bacillus paranthracis 0.00 2 0 G2 2750818 unclassified Bacillus cereus group 0.00 2 2 S 1892404 Bacillus sp. ABP14 0.04 49 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.04 45 45 S 2841656 Bacillus sp. ZHX3 0.00 2 2 S 467262 Bacillus sp. T3 0.00 1 1 S 2709784 Bacillus sp. KH172YL63 0.00 1 1 S 2874284 Bacillus sp. CRB-7 0.00 2 0 G1 1792192 Bacillus altitudinis complex 0.00 2 2 S 293387 Bacillus altitudinis 0.00 1 1 S 561879 Bacillus safensis 0.07 86 79 G 2837504 Heyndrickxia 0.01 7 7 S 1398 Heyndrickxia coagulans 0.07 76 76 G 1055323 Aeribacillus 0.05 54 12 G 400634 Lysinibacillus 0.03 37 37 S 2086577 Lysinibacillus timonensis 0.00 5 5 S 2590012 Lysinibacillus agricola 0.04 42 0 G 2893056 Halalkalibacter 0.04 42 42 S 199441 Halalkalibacter krulwichiae 0.02 22 0 G 175304 Lentibacillus 0.02 20 20 S 1472767 Lentibacillus amyloliquefaciens 0.00 2 0 G1 2614679 unclassified Lentibacillus 0.00 2 2 S 2518176 Lentibacillus sp. CBA3610 0.02 18 16 G 2893057 Shouchella 0.00 2 2 S 79880 Shouchella clausii 0.01 12 0 G 2005375 Alkalicoccus 0.01 12 12 S 1667239 Alkalicoccus halolimnae 0.01 8 0 G 2800373 Priestia 0.01 8 8 S 1404 Priestia megaterium 0.00 5 0 G 84406 Virgibacillus 0.00 5 5 S 447199 Virgibacillus salarius 0.00 4 0 G 45667 Halobacillus 0.00 4 4 S 2932258 Halobacillus shinanisalinarum 0.00 3 0 G 351195 Salimicrobium 0.00 3 0 G1 2619739 unclassified Salimicrobium 0.00 3 3 S 3095364 Salimicrobium sp. PL1-032A 0.00 2 0 G 2675230 Cytobacillus 0.00 2 2 S 665099 Cytobacillus oceanisediminis 0.00 2 0 G 150247 Anoxybacillus 0.00 1 0 S 33934 Anoxybacillus flavithermus 0.00 1 1 S1 491915 Anoxybacillus flavithermus WK1 0.00 1 1 S 247480 Anoxybacillus caldiproteolyticus 0.00 2 0 G 129337 Geobacillus 0.00 2 2 S 1921421 Geobacillus genomosp. 3 0.00 2 0 G 2837508 Rossellomorea 0.00 2 2 S 218284 Rossellomorea vietnamensis 0.00 2 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.00 2 0 S 86665 Halalkalibacterium halodurans 0.00 2 2 S1 272558 Halalkalibacterium halodurans C-125 0.00 2 2 G 2675231 Mesobacillus 0.00 1 0 G 2685905 Salicibibacter 0.00 1 1 S 2743001 Salicibibacter cibi 0.00 1 0 G 2837506 Niallia 0.00 1 1 S 1397 Niallia circulans 0.00 1 0 G 2893060 Alkalihalophilus 0.00 1 1 S 79885 Alkalihalophilus pseudofirmus 0.00 1 0 G 379065 Caldalkalibacillus 0.00 1 0 S 296745 Caldalkalibacillus thermarum 0.00 1 1 S1 986075 Caldalkalibacillus thermarum TA2.A1 0.00 1 0 G 200903 Paraliobacillus 0.00 1 1 S 2213194 Paraliobacillus zengyii 0.31 360 1 F 90964 Staphylococcaceae 0.31 357 83 G 1279 Staphylococcus 0.19 218 215 S 1280 Staphylococcus aureus 0.00 2 2 S1 1229492 Staphylococcus aureus 08BA02176 0.00 1 1 S1 548473 Staphylococcus aureus subsp. aureus TCH60 0.02 24 24 S 29388 Staphylococcus capitis 0.01 12 12 S 70255 Staphylococcus condimenti 0.00 5 4 S 1282 Staphylococcus epidermidis 0.00 1 1 S1 176280 Staphylococcus epidermidis ATCC 12228 0.00 5 0 G1 2815305 Staphylococcus intermedius group 0.00 5 5 S 283734 Staphylococcus pseudintermedius 0.00 4 4 S 1283 Staphylococcus haemolyticus 0.00 2 2 S 1286 Staphylococcus simulans 0.00 1 1 S 170573 Staphylococcus pettenkoferi 0.00 1 1 S 46126 Staphylococcus chromogenes 0.00 1 1 S 28035 Staphylococcus lugdunensis 0.00 1 1 S 214473 Staphylococcus nepalensis 0.00 2 0 G 2803850 Mammaliicoccus 0.00 2 2 S 1296 Mammaliicoccus sciuri 0.02 20 1 F 186822 Paenibacillaceae 0.01 15 1 G 44249 Paenibacillus 0.01 6 6 S 1406 Paenibacillus polymyxa 0.00 5 0 G1 185978 unclassified Paenibacillus 0.00 4 4 S 715179 Paenibacillus sp. sptzw28 0.00 1 1 S 2921652 Paenibacillus sp. FSL R5-0636 0.00 1 1 S 130049 Paenibacillus dendritiformis 0.00 1 1 S 61624 Paenibacillus mucilaginosus 0.00 1 1 S 116718 Paenibacillus azoreducens 0.00 2 0 F1 85151 Aneurinibacillus group 0.00 2 0 G 55079 Aneurinibacillus 0.00 2 0 G1 2642329 unclassified Aneurinibacillus 0.00 2 2 S 3022697 Aneurinibacillus sp. Ricciae_BoGa-3 0.00 2 0 G 329857 Cohnella 0.00 2 2 S 2507935 Cohnella abietis 0.02 19 0 F 186820 Listeriaceae 0.02 18 2 G 1637 Listeria 0.01 9 0 S 1638 Listeria ivanovii 0.01 9 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.01 9 9 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.00 4 4 S 1639 Listeria monocytogenes 0.00 2 0 G1 2642072 unclassified Listeria 0.00 2 2 S 1844999 Listeria sp. PSOL-1 0.00 1 1 S 1642 Listeria innocua 0.00 1 0 G 2755 Brochothrix 0.00 1 1 S 2756 Brochothrix thermosphacta 0.00 5 0 F 186823 Alicyclobacillaceae 0.00 5 1 G 29330 Alicyclobacillus 0.00 4 4 S 2931921 Alicyclobacillus mengziensis 0.00 4 2 F 186818 Planococcaceae 0.00 1 1 G 1569 Sporosarcina 0.00 1 0 G 160795 Ureibacillus 0.00 1 1 S 51173 Ureibacillus thermosphaericus 0.00 2 0 F 186821 Sporolactobacillaceae 0.00 2 0 G 2077 Sporolactobacillus 0.00 1 1 S 269673 Sporolactobacillus terrae 0.00 1 0 G1 2628533 unclassified Sporolactobacillus 0.00 1 1 S 3160863 Sporolactobacillus sp. Y61 0.00 1 1 F 186824 Thermoactinomycetaceae 0.00 1 0 F 539738 Gemellaceae 0.00 1 1 G 1378 Gemella 0.08 92 0 C 186801 Clostridia 0.06 69 0 O 186802 Eubacteriales 0.02 23 0 F 31979 Clostridiaceae 0.02 22 1 G 1485 Clostridium 0.01 8 8 S 1502 Clostridium perfringens 0.01 6 6 S 1716543 Clostridium thermarum 0.00 3 3 S 1491 Clostridium botulinum 0.00 3 0 G1 2614128 unclassified Clostridium 0.00 2 2 S 2483110 Clostridium sp. JN-1 0.00 1 1 S 3070996 Clostridium sp. MB40-C1 0.00 1 1 S 2068654 Clostridium fermenticellae 0.00 1 0 G 1155385 Proteiniclasticum 0.00 1 0 G1 2630696 unclassified Proteiniclasticum 0.00 1 1 S 3036945 Proteiniclasticum sp. QWL-01 0.01 15 0 F 216572 Oscillospiraceae 0.01 14 0 G 1263 Ruminococcus 0.01 9 9 S 1161942 Ruminococcus champanellensis 0.00 4 4 G1 2608920 unclassified Ruminococcus 0.00 1 1 S 2564099 Ruminococcus bovis 0.00 1 0 G 459786 Oscillibacter 0.00 1 1 S 2763056 Oscillibacter hominis 0.01 12 0 F 186807 Peptococcaceae 0.01 10 0 G 2924872 Acididesulfobacillus 0.01 10 10 S 1561005 Acididesulfobacillus acetoxydans 0.00 1 0 G 2840454 Candidatus Formimonas 0.00 1 1 S 1761012 Candidatus Formimonas warabiya 0.00 1 1 G 2916693 Desulforamulus 0.01 9 0 F 186806 Eubacteriaceae 0.01 9 9 G 33951 Acetobacterium 0.01 8 0 F 2937909 Desulfitobacteriaceae 0.01 8 8 G 56112 Dehalobacter 0.00 1 0 F 31984 Heliobacteriaceae 0.00 1 0 G 79598 Heliorestis 0.00 1 1 S 356322 Heliorestis convoluta 0.00 1 0 O1 538999 Eubacteriales incertae sedis 0.00 1 0 G 1392389 Intestinimonas 0.00 1 1 S 1297617 Intestinimonas butyriciproducens 0.01 14 0 O 3082720 Peptostreptococcales 0.01 14 0 F 186804 Peptostreptococcaceae 0.01 14 0 G 1257 Peptostreptococcus 0.01 14 14 S 3003601 Peptostreptococcus equinus 0.00 3 0 O 68295 Thermoanaerobacterales 0.00 3 0 F 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0.00 3 0 G 252965 Mahella 0.00 3 0 S 252966 Mahella australiensis 0.00 3 3 S1 697281 Mahella australiensis 50-1 BON 0.00 2 0 O 53433 Halanaerobiales 0.00 2 0 F 53434 Halobacteroidaceae 0.00 1 0 G 28186 Acetohalobium 0.00 1 0 S 28187 Acetohalobium arabaticum 0.00 1 1 S1 574087 Acetohalobium arabaticum DSM 5501 0.00 1 0 G 42417 Halobacteroides 0.00 1 0 S 42422 Halobacteroides halobius 0.00 1 1 S1 748449 Halobacteroides halobius DSM 5150 0.00 2 0 O 3085636 Lachnospirales 0.00 1 0 F 186803 Lachnospiraceae 0.00 1 1 G 1843210 Anaerocolumna 0.00 1 0 F 1185407 Defluviitaleaceae 0.00 1 0 G 1185408 Defluviitalea 0.00 1 1 S 879970 Defluviitalea saccharophila 0.00 2 0 O 3085656 Monoglobales 0.00 2 0 F 3085657 Monoglobaceae 0.00 2 0 G 2039302 Monoglobus 0.00 2 2 S 1981510 Monoglobus pectinilyticus 0.03 37 0 C 1737404 Tissierellia 0.03 37 0 O 1737405 Tissierellales 0.03 37 0 F 1570339 Peptoniphilaceae 0.03 37 3 G 162289 Peptoniphilus 0.03 30 30 S 54005 Peptoniphilus harei 0.00 4 4 S 3036303 Peptoniphilus genitalis 0.00 4 0 C 909932 Negativicutes 0.00 4 0 O 1843489 Veillonellales 0.00 4 0 F 31977 Veillonellaceae 0.00 2 1 G 29465 Veillonella 0.00 1 1 S 29466 Veillonella parvula 0.00 2 2 G 39948 Dialister 0.00 1 0 C 526524 Erysipelotrichia 0.00 1 0 O 526525 Erysipelotrichales 0.00 1 0 F 128827 Erysipelotrichaceae 0.00 1 0 G 3059504 Allocoprobacillus 0.00 1 1 S 2944914 Allocoprobacillus halotolerans 0.62 711 1 P 201174 Actinomycetota 0.61 705 53 C 1760 Actinomycetes 0.27 317 6 O 85009 Propionibacteriales 0.26 305 12 F 31957 Propionibacteriaceae 0.25 288 7 G 1912216 Cutibacterium 0.24 279 279 S 1747 Cutibacterium acnes 0.00 1 1 S 33010 Cutibacterium avidum 0.00 1 1 S 33011 Cutibacterium granulosum 0.00 3 0 G 1912215 Acidipropionibacterium 0.00 3 3 S 1749 Acidipropionibacterium jensenii 0.00 1 0 G 1743 Propionibacterium 0.00 1 1 S 1744 Propionibacterium freudenreichii 0.00 1 0 G 2801844 Arachnia 0.00 1 1 S 1750 Arachnia propionica 0.01 6 0 F 85015 Nocardioidaceae 0.00 4 4 G 2040 Aeromicrobium 0.00 2 1 G 1839 Nocardioides 0.00 1 0 G1 2615069 unclassified Nocardioides 0.00 1 1 S 2017486 Nocardioides sp. S5 0.15 170 12 O 85006 Micrococcales 0.11 128 6 F 1268 Micrococcaceae 0.08 93 8 G 57493 Kocuria 0.07 85 85 S 71999 Kocuria palustris 0.02 19 19 G 1269 Micrococcus 0.00 5 0 G 1663 Arthrobacter 0.00 5 0 G1 235627 unclassified Arthrobacter 0.00 5 5 S 2991715 Arthrobacter sp. ATA002 0.00 3 0 G 1742989 Glutamicibacter 0.00 3 0 G1 2627139 unclassified Glutamicibacter 0.00 3 3 S 1155384 Glutamicibacter sp. ZJUTW 0.00 2 0 G 32207 Rothia 0.00 1 1 S 2047 Rothia dentocariosa 0.00 1 1 S 169480 Rothia amarae 0.02 24 1 F 85023 Microbacteriaceae 0.01 13 13 G 1705353 Aurantimicrobium 0.01 9 0 G 33882 Microbacterium 0.01 9 9 S 3079935 Microbacterium limosum 0.00 1 0 G 1573 Clavibacter 0.00 1 1 S 31963 Clavibacter nebraskensis 0.00 2 0 F 85020 Dermabacteraceae 0.00 2 0 G 43668 Brachybacterium 0.00 2 0 G1 2623841 unclassified Brachybacterium 0.00 2 2 S 3023517 Brachybacterium sp. GPGPB12 0.00 1 0 F 85016 Cellulomonadaceae 0.00 1 0 G 1926259 Pseudactinotalea 0.00 1 0 G1 2649176 unclassified Pseudactinotalea 0.00 1 1 S 2654547 Pseudactinotalea sp. HY158 0.00 1 0 F 2805591 Tropherymataceae 0.00 1 0 G 2038 Tropheryma 0.00 1 1 S 2039 Tropheryma whipplei 0.00 1 0 F 85021 Intrasporangiaceae 0.00 1 0 G 53355 Terrabacter 0.00 1 0 G1 2630222 unclassified Terrabacter 0.00 1 1 S 3108389 Terrabacter sp. C0L_2 0.00 1 0 F 85017 Promicromonosporaceae 0.00 1 0 G 254250 Isoptericola 0.00 1 0 G1 2623355 unclassified Isoptericola 0.00 1 1 S 3024246 Isoptericola sp. AK164 0.10 121 1 O 85007 Mycobacteriales 0.05 59 0 F 1653 Corynebacteriaceae 0.05 59 29 G 1716 Corynebacterium 0.01 14 0 S 1717 Corynebacterium diphtheriae 0.01 14 14 S1 257309 Corynebacterium diphtheriae NCTC 13129 0.00 3 3 S 53374 Corynebacterium coyleae 0.00 2 2 S 161895 Corynebacterium phocae 0.00 2 2 S 65058 Corynebacterium ulcerans 0.00 1 0 S 441501 Corynebacterium massiliense 0.00 1 1 S1 1121364 Corynebacterium massiliense DSM 45435 0.00 1 0 G1 2624378 unclassified Corynebacterium 0.00 1 1 S 1487956 Corynebacterium sp. ATCC 6931 0.00 1 1 S 43765 Corynebacterium amycolatum 0.00 1 1 S 169292 Corynebacterium aurimucosum 0.00 1 0 S 38288 Corynebacterium genitalium 0.00 1 1 S1 585529 Corynebacterium genitalium ATCC 33030 0.00 1 1 S 38284 Corynebacterium accolens 0.00 1 1 S 43771 Corynebacterium urealyticum 0.00 1 1 S 2055947 Corynebacterium heidelbergense 0.00 1 1 S 1719 Corynebacterium pseudotuberculosis 0.04 44 1 F 1762 Mycobacteriaceae 0.04 43 0 G 1763 Mycobacterium 0.03 39 1 G1 77643 Mycobacterium tuberculosis complex 0.03 38 38 S 1773 Mycobacterium tuberculosis 0.00 4 0 G1 2993898 Mycobacterium ulcerans group 0.00 4 4 S 133549 Mycobacterium shottsii 0.01 16 0 F 85025 Nocardiaceae 0.01 16 0 G 1827 Rhodococcus 0.01 16 16 S 37919 Rhodococcus opacus 0.00 1 0 F 85026 Gordoniaceae 0.00 1 0 G 2053 Gordonia 0.00 1 1 S 84595 Gordonia polyisoprenivorans 0.02 26 0 O 85011 Kitasatosporales 0.02 26 1 F 2062 Streptomycetaceae 0.02 25 2 G 1883 Streptomyces 0.01 17 10 G1 2593676 unclassified Streptomyces 0.00 2 2 S 2933779 Streptomyces sp. WAC00303 0.00 2 2 S 2594460 Streptomyces sp. S1A1-8 0.00 2 2 S 2898276 Streptomyces sp. MRC013 0.00 1 1 S 2748873 Streptomyces sp. CB04723 0.00 1 0 G1 629295 Streptomyces griseus group 0.00 1 0 G2 1482561 Streptomyces anulatus subgroup 0.00 1 1 S 1892 Streptomyces anulatus 0.00 1 1 S 36818 Streptomyces subrutilus 0.00 1 1 S 436397 Streptomyces sudanensis 0.00 1 1 S 887464 Streptomyces laculatispora 0.00 1 0 G1 2867164 Streptomyces rochei group 0.00 1 1 S 67376 Streptomyces vinaceusdrappus 0.00 1 1 S 146923 Streptomyces parvulus 0.01 6 0 O 2037 Actinomycetales 0.01 6 2 F 2049 Actinomycetaceae 0.00 4 4 G 2529408 Schaalia 0.00 5 0 O 85004 Bifidobacteriales 0.00 5 0 F 31953 Bifidobacteriaceae 0.00 5 0 G 1678 Bifidobacterium 0.00 5 0 S 216816 Bifidobacterium longum 0.00 3 3 S1 1682 Bifidobacterium longum subsp. infantis 0.00 2 2 S1 1679 Bifidobacterium longum subsp. longum 0.00 2 0 O 85012 Streptosporangiales 0.00 2 2 F 2012 Thermomonosporaceae 0.00 2 0 O 2039638 Candidatus Nanopelagicales 0.00 2 0 F 2162846 Candidatus Nanopelagicaceae 0.00 2 2 G 622681 Candidatus Planktophila 0.00 1 0 O 85008 Micromonosporales 0.00 1 0 F 28056 Micromonosporaceae 0.00 1 0 G 1873 Micromonospora 0.00 1 0 G1 2617518 unclassified Micromonospora 0.00 1 1 S 3016093 Verrucosispora sp. WMMD1129 0.00 1 0 O 1643683 Acidothermales 0.00 1 0 F 85032 Acidothermaceae 0.00 1 0 G 28048 Acidothermus 0.00 1 0 S 28049 Acidothermus cellulolyticus 0.00 1 1 S1 351607 Acidothermus cellulolyticus 11B 0.00 1 0 O 1643682 Geodermatophilales 0.00 1 0 F 85030 Geodermatophilaceae 0.00 1 0 G 1860 Geodermatophilus 0.00 1 0 S 1861 Geodermatophilus obscurus 0.00 1 1 S1 526225 Geodermatophilus obscurus DSM 43160 0.00 2 0 C 84992 Acidimicrobiia 0.00 2 0 O 84993 Acidimicrobiales 0.00 2 1 F 633392 Iamiaceae 0.00 1 0 G 467975 Iamia 0.00 1 1 S 467976 Iamia majanohamensis 0.00 2 0 C 84998 Coriobacteriia 0.00 1 0 O 84999 Coriobacteriales 0.00 1 0 F 84107 Coriobacteriaceae 0.00 1 0 G 102106 Collinsella 0.00 1 1 S 74426 Collinsella aerofaciens 0.00 1 0 O 1643822 Eggerthellales 0.00 1 1 F 1643826 Eggerthellaceae 0.00 1 0 C 1497346 Thermoleophilia 0.00 1 0 O 588674 Thermoleophilales 0.00 1 0 F 320796 Thermoleophilaceae 0.00 1 0 G 192992 Thermoleophilum 0.00 1 1 S 29539 Thermoleophilum album 0.03 39 0 P 200795 Chloroflexota 0.03 33 0 C 32061 Chloroflexia 0.03 33 1 O 32064 Chloroflexales 0.03 32 0 O1 1508594 Chloroflexineae 0.03 32 0 F 1106 Chloroflexaceae 0.03 32 0 G 1107 Chloroflexus 0.03 32 0 S 152260 Chloroflexus aggregans 0.03 32 32 S1 326427 Chloroflexus aggregans DSM 9485 0.00 4 0 C 292625 Anaerolineae 0.00 4 0 O 292629 Anaerolineales 0.00 4 0 F 292628 Anaerolineaceae 0.00 3 0 G 1649478 Pelolinea 0.00 3 3 S 913107 Pelolinea submarina 0.00 1 0 G 233189 Anaerolinea 0.00 1 0 S 167964 Anaerolinea thermophila 0.00 1 1 S1 926569 Anaerolinea thermophila UNI-1 0.00 2 0 C 475962 Caldilineae 0.00 2 0 O 475963 Caldilineales 0.00 2 0 F 475964 Caldilineaceae 0.00 2 0 G 233191 Caldilinea 0.00 2 0 S 133453 Caldilinea aerophila 0.00 2 2 S1 926550 Caldilinea aerophila DSM 14535 = NBRC 104270 0.02 18 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.02 18 1 P 1117 Cyanobacteriota 0.01 17 1 C 3028117 Cyanophyceae 0.01 10 0 C1 1301283 Oscillatoriophycideae 0.01 9 0 O 1150 Oscillatoriales 0.01 8 0 F 2934961 Sirenicapillariaceae 0.01 8 0 G 2596745 Limnospira 0.01 8 0 S 147322 Limnospira indica 0.01 8 8 S1 2760438 Limnospira indica BM01 0.00 1 0 F 1892254 Oscillatoriaceae 0.00 1 0 G 1198 Phormidium 0.00 1 0 S 2974039 Phormidium yuhuli 0.00 1 1 S1 2940671 Phormidium yuhuli AB48 0.00 1 0 O 1118 Chroococcales 0.00 1 0 F 1890449 Microcystaceae 0.00 1 0 G 1125 Microcystis 0.00 1 0 G1 2643300 unclassified Microcystis 0.00 1 1 S 1967666 Microcystis sp. MC19 0.00 3 1 O 1890424 Synechococcales 0.00 1 0 F 1890426 Synechococcaceae 0.00 1 0 G 1129 Synechococcus 0.00 1 0 G1 2626047 unclassified Synechococcus 0.00 1 1 S 195250 Synechococcus sp. PCC 7336 0.00 1 0 F 2881426 Prochlorococcaceae 0.00 1 1 G 1218 Prochlorococcus 0.00 1 1 O 1161 Nostocales 0.00 1 0 O 2881377 Pseudanabaenales 0.00 1 0 F 1890436 Pseudanabaenaceae 0.00 1 0 G 1152 Pseudanabaena 0.00 1 0 G1 2593292 unclassified Pseudanabaena 0.00 1 1 S 82654 Pseudanabaena sp. PCC 7367 0.00 1 0 O 3079757 Gomontiellales 0.00 1 0 F 1890431 Chamaesiphonaceae 0.00 1 0 G 217161 Chamaesiphon 0.00 1 0 S 1173032 Chamaesiphon minutus 0.00 1 1 S1 1173020 Chamaesiphon minutus PCC 6605 0.01 12 3 P 544448 Mycoplasmatota 0.00 5 0 O 2790996 Mycoplasmoidales 0.00 4 0 F 2790998 Mycoplasmoidaceae 0.00 3 3 G 2129 Ureaplasma 0.00 1 1 G 2995234 Mycoplasmoides 0.00 1 0 F 2895623 Metamycoplasmataceae 0.00 1 0 G 2767358 Mycoplasmopsis 0.00 1 1 S 28903 Mycoplasmopsis bovis 0.00 2 0 C 31969 Mollicutes 0.00 2 0 O 2085 Mycoplasmatales 0.00 2 0 F 2092 Mycoplasmataceae 0.00 2 0 G 2093 Mycoplasma 0.00 2 0 G1 656088 Mycoplasma mycoides group 0.00 2 2 S 1179777 Mycoplasma feriruminatoris 0.00 2 0 C 1912503 Candidatus Izimaplasma 0.00 2 0 O 2975519 Candidatus Izemoplasmatales 0.00 1 0 F 2975520 Candidatus Izemoplasmataceae 0.00 1 0 G 2975521 Candidatus Xianfuyuplasma 0.00 1 1 S 2782163 Candidatus Xianfuyuplasma coldseepsis 0.00 1 0 F 3078170 Hujiaoplasmataceae 0.00 1 0 G 3078171 Hujiaoplasma 0.00 1 1 S 2725268 Hujiaoplasma nucleasis 0.00 3 0 P 1297 Deinococcota 0.00 3 0 C 188787 Deinococci 0.00 3 0 O 118964 Deinococcales 0.00 3 0 F 183710 Deinococcaceae 0.00 3 1 G 1298 Deinococcus 0.00 1 0 S 68909 Deinococcus geothermalis 0.00 1 1 S1 319795 Deinococcus geothermalis DSM 11300 0.00 1 0 S 309891 Deinococcus sonorensis 0.00 1 1 S1 694439 Deinococcus sonorensis KR-87 0.00 3 0 P 67819 Armatimonadota 0.00 3 0 C 1077257 Chthonomonadia 0.00 3 0 O 1077263 Chthonomonadales 0.00 3 0 F 1077264 Chthonomonadaceae 0.00 3 0 G 1077265 Chthonomonas 0.00 3 0 S 454171 Chthonomonas calidirosea 0.00 3 3 S1 1303518 Chthonomonas calidirosea T49 4.48 5176 0 D1 1783270 FCB group 4.46 5159 0 D2 68336 Bacteroidota/Chlorobiota group 4.46 5152 1 P 976 Bacteroidota 4.37 5049 0 C 768503 Cytophagia 4.37 5049 0 O 768507 Cytophagales 4.37 5045 0 F 89373 Cytophagaceae 4.37 5045 0 G 107 Spirosoma 4.37 5044 5044 S 2666025 Spirosoma endbachense 0.00 1 1 S 1211326 Spirosoma aerolatum 0.00 2 0 F 563798 Cyclobacteriaceae 0.00 2 0 G 390846 Echinicola 0.00 2 2 S 2591634 Echinicola soli 0.00 2 0 F 1853232 Hymenobacteraceae 0.00 1 0 G 299566 Adhaeribacter 0.00 1 1 S 2745197 Adhaeribacter radiodurans 0.00 1 1 G 323449 Pontibacter 0.03 38 0 C 1853228 Chitinophagia 0.03 38 0 O 1853229 Chitinophagales 0.03 38 3 F 563835 Chitinophagaceae 0.01 13 12 G 79328 Chitinophaga 0.00 1 1 G1 2619133 unclassified Chitinophaga 0.01 12 11 G 1004303 Ferruginibacter 0.00 1 1 S 2875540 Ferruginibacter albus 0.01 9 0 G 1649506 Thermoflavifilum 0.01 9 0 G1 3099314 unclassified Thermoflavifilum 0.01 9 9 S 1968839 Thermoflavifilum sp. 0.00 1 0 G 504481 Sediminibacterium 0.00 1 0 G1 2635961 unclassified Sediminibacterium 0.00 1 1 S 1751071 Sediminibacterium sp. KACHI17 0.03 32 0 C 117743 Flavobacteriia 0.03 32 0 O 200644 Flavobacteriales 0.02 25 1 F 49546 Flavobacteriaceae 0.01 16 0 G 286104 Winogradskyella 0.01 16 16 S 2686077 Winogradskyella forsetii 0.01 7 0 G 326319 Dokdonia 0.01 7 0 G1 2615033 unclassified Dokdonia 0.01 7 7 S 983548 Dokdonia sp. 4H-3-7-5 0.00 1 0 G 237 Flavobacterium 0.00 1 0 G1 196869 unclassified Flavobacterium 0.00 1 1 S 2732161 Flavobacterium sp. IMCC34852 0.01 6 0 F 2762318 Weeksellaceae 0.01 6 6 F1 2782232 Chryseobacterium group 0.00 1 0 O1 313602 Flavobacteriales incertae sedis 0.00 1 0 G 336809 Candidatus Karelsulcia 0.00 1 1 S 336810 Candidatus Karelsulcia muelleri 0.02 19 0 C 117747 Sphingobacteriia 0.02 19 0 O 200666 Sphingobacteriales 0.02 19 1 F 84566 Sphingobacteriaceae 0.01 13 0 G 28453 Sphingobacterium 0.01 11 11 S 258 Sphingobacterium spiritivorum 0.00 2 2 S 662858 Sphingobacterium bambusae 0.00 4 0 G 376469 Olivibacter 0.00 4 0 G1 2632301 unclassified Olivibacter 0.00 4 4 S 2592345 Olivibacter sp. LS-1 0.00 1 0 G 1649482 Pseudopedobacter 0.00 1 0 S 151895 Pseudopedobacter saltans 0.00 1 1 S1 762903 Pseudopedobacter saltans DSM 12145 0.01 13 0 C 200643 Bacteroidia 0.01 11 0 O 171549 Bacteroidales 0.01 8 0 F 815 Bacteroidaceae 0.01 8 0 G 816 Bacteroides 0.01 8 8 S 818 Bacteroides thetaiotaomicron 0.00 3 1 F 171552 Prevotellaceae 0.00 1 0 G 838 Prevotella 0.00 1 1 S 28128 Prevotella corporis 0.00 1 0 G 2974251 Segatella 0.00 1 0 S 165179 Segatella copri 0.00 1 1 S1 537011 Segatella copri DSM 18205 0.00 2 0 O 1970189 Marinilabiliales 0.00 2 1 F 1471398 Prolixibacteraceae 0.00 1 0 G 1254401 Sunxiuqinia 0.00 1 0 G1 1573824 environmental samples 0.00 1 1 S 1573825 uncultured Sunxiuqinia sp. 0.01 7 0 P 1853220 Rhodothermota 0.01 7 0 C 1853222 Rhodothermia 0.01 7 6 O 1853224 Rhodothermales 0.00 1 0 F 563843 Rhodothermaceae 0.00 1 0 G 2893090 Rhodocaloribacter 0.00 1 1 S 2558931 Rhodocaloribacter litoris 0.01 17 0 P 456828 Candidatus Cloacimonadota 0.01 17 0 C 3039863 Candidatus Cloacimonadia 0.01 17 0 O 3039864 Candidatus Cloacimonadales 0.01 17 0 F 3039865 Candidatus Cloacimonadaceae 0.01 17 0 G 456826 Candidatus Cloacimonas 0.01 17 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.01 17 17 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.31 360 0 P 508458 Synergistota 0.31 360 0 C 649775 Synergistia 0.31 360 0 O 649776 Synergistales 0.31 359 0 F 649777 Synergistaceae 0.31 356 0 G 81411 Aminomonas 0.31 356 0 S 81412 Aminomonas paucivorans 0.31 356 356 S1 584708 Aminomonas paucivorans DSM 12260 0.00 2 0 G 508459 Cloacibacillus 0.00 2 2 S 1197717 Cloacibacillus porcorum 0.00 1 0 G 81461 Thermanaerovibrio 0.00 1 0 S 108007 Thermanaerovibrio velox 0.00 1 1 S1 926567 Thermanaerovibrio velox DSM 12556 0.00 1 0 F 3029085 Aminithiophilaceae 0.00 1 0 G 3029078 Aminithiophilus 0.00 1 1 S 3029084 Aminithiophilus ramosus 0.07 84 0 P 29547 Campylobacterota 0.07 84 0 C 3031852 Epsilonproteobacteria 0.07 84 0 O 213849 Campylobacterales 0.06 69 0 F 72293 Helicobacteraceae 0.06 69 3 G 209 Helicobacter 0.04 46 46 S 213 Helicobacter cinaedi 0.02 20 20 S 210 Helicobacter pylori 0.01 8 0 F 72294 Campylobacteraceae 0.01 8 0 G 194 Campylobacter 0.01 6 6 S 449520 Campylobacter canadensis 0.00 2 0 S 522485 Campylobacter avium 0.00 2 2 S1 522484 Campylobacter avium LMG 24591 0.01 7 0 F 2771471 Sulfurimonadaceae 0.01 7 1 G 202746 Sulfurimonas 0.01 6 6 G1 2623549 unclassified Sulfurimonas 0.07 80 12 P 200940 Thermodesulfobacteriota 0.03 40 0 C 3031449 Desulfovibrionia 0.03 40 0 O 213115 Desulfovibrionales 0.03 40 0 F 194924 Desulfovibrionaceae 0.02 26 26 G 2035811 Pseudodesulfovibrio 0.01 12 0 G 3126915 Taurinivorans 0.01 12 12 S 2787751 Taurinivorans muris 0.00 2 0 G 41707 Lawsonia 0.00 2 2 S 29546 Lawsonia intracellularis 0.01 16 0 C 3031451 Desulfobulbia 0.01 16 2 O 3024411 Desulfobulbales 0.01 13 0 F 213121 Desulfobulbaceae 0.01 13 0 G 893 Desulfobulbus 0.01 13 13 S 1986146 Desulfobulbus oralis 0.00 1 0 F 2886822 Desulfocapsaceae 0.00 1 0 G 53318 Desulfocapsa 0.00 1 0 S 65555 Desulfocapsa sulfexigens 0.00 1 1 S1 1167006 Desulfocapsa sulfexigens DSM 10523 0.01 9 0 C 3031651 Desulfuromonadia 0.01 8 0 O 69541 Desulfuromonadales 0.01 8 0 F 213421 Desulfuromonadaceae 0.01 8 7 G 890 Desulfuromonas 0.00 1 1 S 1603606 Desulfuromonas soudanensis 0.00 1 0 O 3031668 Geobacterales 0.00 1 0 F 213422 Geobacteraceae 0.00 1 0 G 2910589 Geotalea 0.00 1 0 S 351604 Geotalea uraniireducens 0.00 1 1 S1 351605 Geotalea uraniireducens Rf4 0.00 2 0 C 67799 Thermodesulfobacteria 0.00 2 0 O 188710 Thermodesulfobacteriales 0.00 2 0 F 188711 Thermodesulfobacteriaceae 0.00 1 1 G 1740 Thermodesulfobacterium 0.00 1 0 G 2033601 Thermosulfuriphilus 0.00 1 1 S 1936021 Thermosulfuriphilus ammonigenes 0.00 1 0 C 3024408 Syntrophobacteria 0.00 1 0 O 213462 Syntrophobacterales 0.00 1 0 F 213465 Syntrophobacteraceae 0.00 1 0 G 29526 Syntrophobacter 0.00 1 0 S 119484 Syntrophobacter fumaroxidans 0.00 1 1 S1 335543 Syntrophobacter fumaroxidans MPOB 0.04 50 0 D1 1783257 PVC group 0.02 26 0 P 203682 Planctomycetota 0.02 26 3 C 203683 Planctomycetia 0.02 19 0 O 2691354 Pirellulales 0.01 10 8 F 2691357 Pirellulaceae 0.00 1 0 G 265487 Blastopirellula 0.00 1 0 G1 2647022 unclassified Blastopirellula 0.00 1 1 S 2943192 Blastopirellula sp. J2-11 0.00 1 0 G 2795775 Lignipirellula 0.00 1 1 S 2528010 Lignipirellula cremea 0.01 9 0 F 2691359 Lacipirellulaceae 0.01 7 0 G 2795783 Pirellulimonas 0.01 7 7 S 2528009 Pirellulimonas nuda 0.00 1 0 G 1400386 Bythopirellula 0.00 1 1 S 1400387 Bythopirellula goksoeyrii 0.00 1 0 G 2795782 Botrimarina 0.00 1 1 S 2528022 Botrimarina mediterranea 0.00 2 0 O 112 Planctomycetales 0.00 2 1 F 126 Planctomycetaceae 0.00 1 0 G 2795777 Maioricimonas 0.00 1 1 S 2528026 Maioricimonas rarisocia 0.00 2 0 O 2691356 Isosphaerales 0.00 2 1 F 1763524 Isosphaeraceae 0.00 1 0 G 1763521 Paludisphaera 0.00 1 1 S 1387353 Paludisphaera borealis 0.02 20 0 P 74201 Verrucomicrobiota 0.01 14 0 C 203494 Verrucomicrobiia 0.01 13 0 O 134621 Limisphaerales 0.01 13 0 F 3050006 Fontisphaeraceae 0.01 13 0 G 3050007 Fontisphaera 0.01 13 13 S 2974023 Fontisphaera persica 0.00 1 0 O 48461 Verrucomicrobiales 0.00 1 1 F 203557 Verrucomicrobiaceae 0.01 6 0 C 414999 Opitutia 0.00 5 0 O 415001 Puniceicoccales 0.00 4 0 F 3056371 Coraliomargaritaceae 0.00 4 4 G 442430 Coraliomargarita 0.00 1 0 O1 3056381 Puniceicoccales incertae sedis 0.00 1 0 G 3049269 Candidatus Pelagisphaera 0.00 1 1 S 2684113 Candidatus Pelagisphaera phototrophica 0.00 1 0 O 415000 Opitutales 0.00 1 1 F 134623 Opitutaceae 0.00 4 0 P 134625 Kiritimatiellota 0.00 4 0 C 2907184 Tichowtungiia 0.00 4 0 O 2907185 Tichowtungiales 0.00 4 0 F 2907186 Tichowtungiaceae 0.00 4 0 G 2907187 Tichowtungia 0.00 4 4 S 2697043 Tichowtungia aerotolerans 0.03 35 0 P 57723 Acidobacteriota 0.02 20 0 C 204432 Terriglobia 0.02 20 0 O 332160 Bryobacterales 0.02 20 0 F 1962910 Bryobacteraceae 0.02 20 20 G 1649475 Paludibaculum 0.01 11 0 C 533205 Holophagae 0.01 11 0 O 574975 Holophagales 0.01 11 0 F 574976 Holophagaceae 0.01 6 6 G 44675 Geothrix 0.00 5 0 G 35838 Holophaga 0.00 5 0 G1 89282 environmental samples 0.00 5 5 S 188475 uncultured Holophaga sp. 0.00 4 0 C 1813735 Vicinamibacteria 0.00 4 0 O 2910145 Vicinamibacterales 0.00 4 0 F 2211325 Vicinamibacteraceae 0.00 4 1 G 2004797 Luteitalea 0.00 3 0 G1 2626009 unclassified Luteitalea 0.00 3 3 S 2802971 Luteitalea sp. TBR-22 0.03 34 0 D1 2323 Bacteria incertae sedis 0.03 34 0 D2 1783234 Bacteria candidate phyla 0.03 33 21 P 95818 Candidatus Saccharibacteria 0.01 12 0 C 2093818 Candidatus Saccharimonadia 0.01 12 0 O 2093825 Candidatus Saccharimonadales 0.01 12 0 F 2171986 Candidatus Saccharimonadaceae 0.01 12 0 G 1331051 Candidatus Saccharimonas 0.01 12 12 S 1332188 Candidatus Saccharimonas aalborgensis 0.00 1 0 D3 1783273 Patescibacteria group 0.00 1 0 D4 1794810 Microgenomates group 0.00 1 0 D5 2715732 Microgenomates group incertae sedis 0.00 1 0 F 2715733 Candidatus Chazhemtobacteraceae 0.00 1 0 G 2715734 Candidatus Chazhemtobacterium 0.00 1 1 S 2715735 Candidatus Chazhemtobacterium aquaticus 0.02 27 0 P 2818505 Myxococcota 0.02 26 0 P1 3031711 Polyangia 0.02 26 0 O 3031712 Polyangiales 0.02 18 0 F 49 Polyangiaceae 0.01 11 0 G 1882917 Pajaroellobacter 0.01 11 11 S 1882918 Pajaroellobacter abortibovis 0.01 7 0 G 50 Chondromyces 0.01 7 7 S 52 Chondromyces crocatus 0.01 8 0 F 1055686 Sandaracinaceae 0.01 8 0 G 1055688 Sandaracinus 0.01 8 8 S 927083 Sandaracinus amylolyticus 0.00 1 0 C 32015 Myxococcia 0.00 1 0 O 29 Myxococcales 0.00 1 0 O1 80811 Cystobacterineae 0.00 1 0 F 1524215 Anaeromyxobacteraceae 0.00 1 1 G 161492 Anaeromyxobacter 0.01 17 0 P 203691 Spirochaetota 0.01 17 0 C 203692 Spirochaetia 0.01 17 0 O 136 Spirochaetales 0.01 12 0 F 2845253 Treponemataceae 0.01 12 0 G 157 Treponema 0.01 6 6 S 162 Treponema phagedenis 0.01 6 6 S 165 Treponema saccharophilum 0.00 5 0 F 1643685 Borreliaceae 0.00 5 2 G 64895 Borreliella 0.00 3 3 S 100177 Borreliella lusitaniae 0.01 9 0 P 2138240 Coprothermobacterota 0.01 9 0 C 2138243 Coprothermobacteria 0.01 9 0 O 2138246 Coprothermobacterales 0.01 9 0 F 2138247 Coprothermobacteraceae 0.01 9 0 G 68335 Coprothermobacter 0.01 9 0 S 35786 Coprothermobacter proteolyticus 0.01 9 9 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.00 5 0 P 200930 Deferribacterota 0.00 5 0 C 68337 Deferribacteres 0.00 5 1 O 191393 Deferribacterales 0.00 3 0 F 2945021 Calditerrivibrionaceae 0.00 3 0 G 545865 Calditerrivibrio 0.00 3 0 S 477976 Calditerrivibrio nitroreducens 0.00 3 3 S1 768670 Calditerrivibrio nitroreducens DSM 19672 0.00 1 0 F 2945019 Geovibrionaceae 0.00 1 0 G 46200 Geovibrio 0.00 1 1 S 139438 Geovibrio thiophilus 0.00 1 0 D1 2498710 Caldisericota/Cryosericota group 0.00 1 0 P 67814 Caldisericota 0.00 1 0 C 693071 Caldisericia 0.00 1 0 O 693072 Caldisericales 0.00 1 0 F 693073 Caldisericaceae 0.00 1 0 G 693074 Caldisericum 0.00 1 0 S 693075 Caldisericum exile 0.00 1 1 S1 511051 Caldisericum exile AZM16c01 0.00 1 0 P 200783 Aquificota 0.00 1 0 C 187857 Aquificia 0.00 1 0 O 32069 Aquificales 0.00 1 1 F 64898 Aquificaceae 0.00 1 0 P 40117 Nitrospirota 0.00 1 0 C 203693 Nitrospiria 0.00 1 0 O 189778 Nitrospirales 0.00 1 0 F 189779 Nitrospiraceae 0.00 1 1 G 1234 Nitrospira 0.00 1 0 P 32066 Fusobacteriota 0.00 1 0 C 203490 Fusobacteriia 0.00 1 0 O 203491 Fusobacteriales 0.00 1 0 F 1129771 Leptotrichiaceae 0.00 1 0 G 32067 Leptotrichia 0.00 1 0 G1 2633022 unclassified Leptotrichia 0.00 1 1 S 1785996 Leptotrichia sp. oral taxon 847