0.15 151 151 U 0 unclassified 99.85 97726 2 R 1 root 99.84 97724 0 R1 131567 cellular organisms 99.84 97724 19846 D 2 Bacteria 42.55 41646 419 P 1224 Pseudomonadota 40.20 39348 2516 C 1236 Gammaproteobacteria 31.38 30712 2288 O 91347 Enterobacterales 25.81 25262 2746 F 543 Enterobacteriaceae 12.78 12512 247 G 561 Escherichia 12.39 12128 11364 S 562 Escherichia coli 0.17 166 14 S1 83334 Escherichia coli O157:H7 0.13 127 127 S2 155864 Escherichia coli O157:H7 str. EDL933 0.01 13 13 S2 502346 Escherichia coli O157:H7 str. TW14588 0.01 12 12 S2 1328859 Escherichia coli O157:H7 str. SS17 0.13 132 132 S1 316435 Escherichia coli Nissle 1917 0.13 124 124 S1 2079157 Escherichia coli O2:H1 0.07 73 73 S1 1322345 Escherichia coli ATCC 25922 0.07 67 67 S1 331112 Escherichia coli HS 0.06 56 56 S1 2874053 Escherichia coli O25:H1 0.06 55 55 S1 1446600 Escherichia coli O15:H18 0.04 42 42 S1 655817 Escherichia coli ABU 83972 0.02 23 23 S1 244320 Escherichia coli O55:H7 0.01 10 0 S1 1038927 Escherichia coli O104:H4 0.01 10 10 S2 1134782 Escherichia coli O104:H4 str. 2009EL-2050 0.01 8 8 S1 376725 Escherichia coli O103:H2 0.00 3 3 S1 439855 Escherichia coli SMS-3-5 0.00 2 2 S1 362663 Escherichia coli 536 0.00 2 2 S1 1392858 Escherichia coli M12 0.00 1 1 S1 1502658 Escherichia coli O2:H6 0.08 77 77 S 1499973 Escherichia marmotae 0.05 49 49 S 208962 Escherichia albertii 0.01 11 11 S 564 Escherichia fergusonii 3.92 3841 84 G 590 Salmonella 3.74 3659 817 S 28901 Salmonella enterica 2.90 2842 148 S1 59201 Salmonella enterica subsp. enterica 0.87 847 847 S2 2583588 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- 0.62 602 0 S2 58096 Salmonella enterica subsp. enterica serovar Bareilly 0.56 551 551 S3 1182177 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000752 0.04 39 39 S3 1182172 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000661 0.01 12 12 S3 1173427 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 0.33 324 324 S2 600 Salmonella enterica subsp. enterica serovar Thompson 0.32 313 5 S2 611 Salmonella enterica subsp. enterica serovar Heidelberg 0.30 290 290 S3 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 0.02 18 18 S3 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 0.19 185 185 S2 2579247 Salmonella enterica subsp. enterica serovar Rough O:-:- 0.14 141 141 S2 149539 Salmonella enterica subsp. enterica serovar Enteritidis 0.10 95 64 S2 90371 Salmonella enterica subsp. enterica serovar Typhimurium 0.02 17 17 S3 1008297 Salmonella enterica subsp. enterica serovar Typhimurium str. 798 0.01 14 14 S3 1454647 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1810 0.04 42 42 S2 90105 Salmonella enterica subsp. enterica serovar Saintpaul 0.04 42 0 S2 1242084 Salmonella enterica subsp. enterica serovar Krefeld 0.04 42 42 S3 1242106 Salmonella enterica subsp. enterica serovar Krefeld str. SA20030536 0.03 34 34 S2 115981 Salmonella enterica subsp. enterica serovar Montevideo 0.02 21 21 S2 90370 Salmonella enterica subsp. enterica serovar Typhi 0.02 16 7 S2 108619 Salmonella enterica subsp. enterica serovar Newport 0.01 9 9 S3 858307 Salmonella enterica subsp. enterica serovar Newport str. CVM N1543 0.01 9 9 S2 29474 Salmonella enterica subsp. enterica serovar California 0.01 8 8 S2 192955 Salmonella enterica subsp. enterica serovar Kentucky 0.00 4 4 S2 82689 Salmonella enterica subsp. enterica serovar Muenster 0.00 3 0 S2 57046 Salmonella enterica subsp. enterica serovar Paratyphi C 0.00 3 3 S3 476213 Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 0.00 3 3 S2 98360 Salmonella enterica subsp. enterica serovar Dublin 0.00 3 3 S2 440524 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- 0.00 2 2 S2 58712 Salmonella enterica subsp. enterica serovar Anatum 0.10 98 0 S 54736 Salmonella bongori 0.10 98 98 S1 1299282 Salmonella bongori CFSAN000510 3.25 3184 0 G 547 Enterobacter 3.23 3158 4 G1 354276 Enterobacter cloacae complex 2.22 2171 2171 S 299767 Enterobacter ludwigii 0.77 757 741 S 158836 Enterobacter hormaechei 0.02 16 16 S1 1296536 Enterobacter hormaechei subsp. xiangfangensis 0.13 123 57 S 550 Enterobacter cloacae 0.07 66 66 S1 336306 Enterobacter cloacae subsp. cloacae 0.05 50 50 S 208224 Enterobacter kobei 0.04 37 37 S 61645 Enterobacter asburiae 0.01 14 14 S 1812935 Enterobacter roggenkampii 0.00 2 2 S 3029761 Enterobacter pasteurii 0.02 24 24 S 881260 Enterobacter bugandensis 0.00 2 1 G1 2608935 unclassified Enterobacter 0.00 1 1 S 2742676 Enterobacter sp. RHBSTW-00994 1.36 1335 0 F1 2890311 Klebsiella/Raoultella group 1.35 1324 26 G 570 Klebsiella 1.09 1065 891 S 573 Klebsiella pneumoniae 0.10 100 95 S1 72407 Klebsiella pneumoniae subsp. pneumoniae 0.01 5 5 S2 1094170 Klebsiella pneumoniae subsp. pneumoniae KPNIH10 0.08 74 74 S1 1049565 Klebsiella pneumoniae KCTC 2242 0.07 68 6 S 1463165 Klebsiella quasipneumoniae 0.06 62 62 S1 1667327 Klebsiella quasipneumoniae subsp. quasipneumoniae 0.05 50 26 S 244366 Klebsiella variicola 0.02 24 24 S1 640131 Klebsiella variicola At-22 0.04 42 42 S 548 Klebsiella aerogenes 0.03 34 34 S 1134687 Klebsiella michiganensis 0.03 26 0 G1 2608929 unclassified Klebsiella 0.02 15 15 S 2829835 Klebsiella sp. P1954 0.01 11 11 S 2851540 Klebsiella sp. PL-2018 0.01 9 9 S 2153354 Klebsiella huaxiensis 0.00 4 4 S 1259973 Klebsiella electrica 0.01 11 0 G 160674 Raoultella 0.01 8 8 S 54291 Raoultella ornithinolytica 0.00 2 2 S 575 Raoultella planticola 0.00 1 0 G1 2627600 unclassified Raoultella 0.00 1 1 S 2799495 Raoultella sp. XY-1 0.35 339 0 G 620 Shigella 0.34 329 329 S 623 Shigella flexneri 0.01 10 10 S 621 Shigella boydii 0.32 315 4 G 544 Citrobacter 0.26 258 0 G1 1344959 Citrobacter freundii complex 0.13 132 132 S 1639133 Citrobacter portucalensis 0.08 75 75 S 67828 Citrobacter gillenii 0.03 31 31 S 546 Citrobacter freundii 0.02 17 0 G2 2816438 unclassified Citrobacter freundii complex 0.02 17 17 S 1686385 Citrobacter sp. BIDMC108 0.00 3 3 S 67827 Citrobacter werkmanii 0.03 28 0 S 35703 Citrobacter amalonaticus 0.03 28 28 S1 1261127 Citrobacter amalonaticus Y19 0.02 22 22 S 2971264 Citrobacter enshiensis 0.00 3 3 S 545 Citrobacter koseri 0.21 205 1 G 1330547 Kosakonia 0.19 190 190 S 208223 Kosakonia cowanii 0.01 14 14 S 283686 Kosakonia radicincitans 0.19 182 21 F1 36866 unclassified Enterobacteriaceae 0.08 83 83 S 2675793 Enterobacteriaceae endosymbiont of Plateumaris braccata 0.06 61 61 S 2675787 Enterobacteriaceae endosymbiont of Donacia tomentosa 0.02 15 15 S 2675780 Enterobacteriaceae endosymbiont of Donacia piscatrix 0.00 2 2 S 2675786 Enterobacteriaceae endosymbiont of Donacia thalassina 0.18 179 0 F1 191675 Enterobacteriaceae incertae sedis 0.18 179 2 F2 84563 ant, tsetse, mealybug, aphid, etc. endosymbionts 0.13 128 0 F3 84564 ant endosymbionts 0.07 68 2 G 203804 Candidatus Blochmanniella 0.06 57 21 G1 711328 unclassified Candidatus Blochmanniella 0.03 34 34 S 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri 0.00 2 2 S 2681987 Blochmannia endosymbiont of Colobopsis nipponica 0.00 4 4 S 251538 Candidatus Blochmannia ocreatus 0.00 3 0 S 251535 Candidatus Blochmanniella vafra 0.00 3 3 S1 859654 Candidatus Blochmanniella vafra str. BVAF 0.00 2 2 S 251540 Candidatus Blochmannia vicinus 0.06 60 0 G 1699619 Candidatus Westeberhardia 0.06 60 60 S 1594731 Candidatus Westeberhardia cardiocondylae 0.03 25 0 F3 146507 aphid secondary symbionts 0.01 14 14 S 1199245 secondary endosymbiont of Ctenarytaina eucalypti 0.01 7 0 G 568988 Candidatus Regiella 0.01 7 0 G1 3077955 unclassified Candidatus Regiella 0.01 7 7 S 3077956 Candidatus Regiella endosymbiont of Tuberolachnus salignus 0.00 3 3 S 134287 secondary endosymbiont of Heteropsylla cubana 0.00 1 1 G 568987 Candidatus Hamiltonella 0.02 15 0 G 1302410 Candidatus Annandia 0.02 15 15 S 1302411 Candidatus Annandia adelgestsuga 0.00 3 0 G 1906660 Candidatus Mikella 0.00 3 3 S 1778264 Candidatus Mikella endobia 0.00 2 0 G 1906661 Candidatus Gullanella 0.00 2 2 S 1070130 Candidatus Gullanella endobia 0.00 1 0 F3 199891 mealybug secondary endosymbionts 0.00 1 1 S 1835721 secondary endosymbiont of Trabutina mannipara 0.00 1 0 G 472825 Candidatus Purcelliella 0.00 1 1 S 472834 Candidatus Purcelliella pentastirinorum 0.00 1 0 G 1906657 Candidatus Doolittlea 0.00 1 1 S 1778262 Candidatus Doolittlea endobia 0.00 1 0 G 1906659 Candidatus Hoaglandella 0.00 1 1 S 1778263 Candidatus Hoaglandella endobia 0.17 171 0 G 2815296 Jejubacter 0.17 171 171 S 2579935 Jejubacter calystegiae 0.07 70 0 G 409304 Candidatus Ishikawella 0.07 70 0 S 168169 Candidatus Ishikawella capsulata 0.07 70 70 S1 476281 Candidatus Ishikawaella capsulata Mpkobe 0.05 45 0 G 1330545 Lelliottia 0.05 45 45 S 61646 Lelliottia amnigena 0.04 43 0 G 1048757 Candidatus Moranella 0.04 43 43 S 1048758 Candidatus Moranella endobia 0.03 32 0 G 1177214 Candidatus Profftia 0.03 32 0 G1 2735709 unclassified Candidatus Profftia 0.03 32 32 S 2864218 Candidatus Profftia sp. (ex Adelges kitamiensis) 0.03 25 0 G 2303321 Superficieibacter 0.03 25 0 G1 2645744 unclassified Superficieibacter 0.03 25 25 S 3031919 Superficieibacter sp. HKU1 0.01 10 0 G 2726810 Scandinavium 0.01 10 10 S 1851514 Scandinavium goeteborgense 0.01 8 0 G 702 Plesiomonas 0.01 8 8 S 703 Plesiomonas shigelloides 0.01 5 3 G 413496 Cronobacter 0.00 2 2 S 28141 Cronobacter sakazakii 0.01 5 0 G 1335483 Shimwellia 0.01 5 5 S 563 Shimwellia blattae 0.01 5 5 G 158483 Cedecea 0.00 2 2 G 401618 Candidatus Riesia 0.00 2 0 G 158851 Trabulsiella 0.00 2 2 S 379893 Trabulsiella odontotermitis 0.00 1 0 G 83654 Leclercia 0.00 1 1 S 83655 Leclercia adecarboxylata 1.79 1755 0 F 2812006 Bruguierivoracaceae 1.79 1755 0 G 84565 Sodalis 1.55 1521 1521 S 2697027 Sodalis ligni 0.21 208 0 S 1486991 Candidatus Sodalis pierantonius 0.21 208 208 S1 2342 Candidatus Sodalis pierantonius str. SOPE 0.02 18 0 G1 2636512 unclassified Sodalis 0.02 18 18 S 1929246 Sodalis endosymbiont of Henestaris halophilus 0.01 8 8 S 1239307 Sodalis praecaptivus 0.70 689 5 F 1903411 Yersiniaceae 0.44 428 1 G 613 Serratia 0.31 299 299 S 138074 Serratia symbiotica 0.06 60 60 S 614 Serratia liquefaciens 0.04 42 42 S 61652 Serratia rubidaea 0.02 17 0 S 82996 Serratia plymuthica 0.02 17 17 S1 1006598 Serratia plymuthica RVH1 0.01 9 0 G1 2647522 unclassified Serratia (in: enterobacteria) 0.01 9 9 S 2785630 Serratia sp. CMO1 0.24 237 0 G 629 Yersinia 0.19 188 0 G1 1649845 Yersinia pseudotuberculosis complex 0.19 186 7 S 632 Yersinia pestis 0.16 159 159 S1 748678 Yersinia pestis str. Pestoides B 0.01 8 8 S1 360102 Yersinia pestis Antiqua 0.01 8 8 S1 649716 Yersinia pestis Pestoides G 0.00 4 4 S1 1345701 Yersinia pestis 790 0.00 2 2 S 633 Yersinia pseudotuberculosis 0.05 45 45 S 935293 Yersinia entomophaga 0.00 3 0 S 630 Yersinia enterocolitica 0.00 3 0 S1 150053 Yersinia enterocolitica subsp. palearctica 0.00 3 3 S2 994476 Yersinia enterocolitica subsp. palearctica 105.5R(r) 0.00 1 0 S 29483 Yersinia aldovae 0.00 1 1 S1 1453495 Yersinia aldovae 670-83 0.02 16 16 G 1927833 Candidatus Fukatsuia 0.00 2 0 G 34037 Rahnella 0.00 1 1 S 58169 Rahnella inusitata 0.00 1 1 S 2816248 Rahnella bonaserana 0.00 1 0 G 2716544 Chimaeribacter 0.00 1 1 S 2060066 Chimaeribacter arupi 0.30 297 11 F 1903414 Morganellaceae 0.10 101 0 G 581 Morganella 0.10 101 94 S 582 Morganella morganii 0.01 7 7 S1 180434 Morganella morganii subsp. morganii 0.06 61 0 G 583 Proteus 0.06 58 58 S 584 Proteus mirabilis 0.00 3 0 S 1574161 Proteus terrae 0.00 3 3 S1 626774 Proteus terrae subsp. cibarius 0.06 60 14 G 637 Arsenophonus 0.03 26 26 S 638 Arsenophonus nasoniae 0.02 18 0 G1 2627083 unclassified Arsenophonus 0.01 12 12 S 3066235 Arsenophonus endosymbiont of Crataerina pallida 0.01 6 6 S 3041619 Arsenophonus sp. aPb 0.00 2 2 S 634113 Candidatus Arsenophonus lipoptenae 0.03 26 2 G 626 Xenorhabdus 0.01 11 0 S 40577 Xenorhabdus poinarii 0.01 11 11 S1 1354304 Xenorhabdus poinarii G6 0.01 8 8 S 290110 Xenorhabdus budapestensis 0.00 4 4 S 351671 Xenorhabdus doucetiae 0.00 1 0 S 40576 Xenorhabdus bovienii 0.00 1 1 S1 406818 Xenorhabdus bovienii SS-2004 0.02 23 23 G 29487 Photorhabdus 0.02 15 0 G 586 Providencia 0.01 13 13 S 1715285 Candidatus Providencia siddallii 0.00 2 0 S 516075 Providencia sneebia 0.00 2 2 S1 1141660 Providencia sneebia DSM 19967 0.18 178 8 F 1903409 Erwiniaceae 0.07 70 1 G 53335 Pantoea 0.03 34 34 S 1235990 Candidatus Pantoea carbekii 0.02 18 18 S 66269 Pantoea stewartii 0.02 17 17 S 59814 Pantoea dispersa 0.07 64 0 G 551 Erwinia 0.04 37 0 G1 2622719 unclassified Erwinia 0.04 36 36 S 215689 Erwinia sp. Ejp617 0.00 1 1 S 3141543 Erwinia sp. HDF1-3R 0.02 22 22 S 1922217 Candidatus Erwinia haradaeae 0.00 4 4 S 65700 Erwinia tracheiphila 0.00 1 1 S 552 Erwinia amylovora 0.03 25 0 G 32199 Buchnera 0.03 25 17 S 9 Buchnera aphidicola 0.01 5 5 S1 2315800 Buchnera aphidicola (Stegophylla sp.) 0.00 3 3 S1 1241868 Buchnera aphidicola (Mollitrichosiphum nigrofasciatum) 0.01 8 0 G 2997349 Winslowiella 0.01 8 8 S 92490 Winslowiella toletana 0.00 3 0 G 51228 Wigglesworthia 0.00 3 0 S 51229 Wigglesworthia glossinidia 0.00 3 0 S1 36868 Wigglesworthia glossinidia endosymbiont of Glossina morsitans 0.00 3 3 S2 1142511 Wigglesworthia glossinidia endosymbiont of Glossina morsitans morsitans (Yale colony) 0.17 167 1 F 1903410 Pectobacteriaceae 0.10 98 32 G 204037 Dickeya 0.04 43 43 S 1089444 Dickeya solani 0.02 15 15 S 1778540 Dickeya fangzhongdai 0.01 6 0 S 204038 Dickeya dadantii 0.01 6 6 S1 1224149 Dickeya dadantii NCPPB 3537 0.00 1 1 S 204042 Dickeya zeae 0.00 1 1 S 2259638 Dickeya lacustris 0.07 67 1 G 122277 Pectobacterium 0.05 46 35 S 1905730 Pectobacterium parmentieri 0.01 11 11 S1 561231 Pectobacterium parmentieri WPP163 0.01 11 11 S 2488639 Pectobacterium versatile 0.00 4 0 G1 2627739 unclassified Pectobacterium 0.00 4 4 S 2738983 Pectobacterium sp. PL64 0.00 3 3 S 2485124 Pectobacterium polonicum 0.00 2 2 S 180957 Pectobacterium brasiliense 0.00 1 0 G 1082702 Lonsdalea 0.00 1 1 S 1172565 Lonsdalea populi 0.06 58 0 F 1903412 Hafniaceae 0.06 58 50 G 635 Edwardsiella 0.01 5 5 S 636 Edwardsiella tarda 0.00 3 3 S 67780 Edwardsiella ictaluri 0.02 17 0 F 3120698 Gallaecimonadaceae 0.02 17 0 G 745410 Gallaecimonas 0.02 16 16 S 3029055 Gallaecimonas kandeliae 0.00 1 1 S 2291597 Gallaecimonas mangrovi 0.00 1 0 F 1903416 Budviciaceae 0.00 1 0 G 2172100 Limnobaculum 0.00 1 1 S 2498113 Limnobaculum zhutongyuii 1.55 1519 0 O 135625 Pasteurellales 1.55 1519 8 F 712 Pasteurellaceae 1.50 1471 0 G 713 Actinobacillus 1.48 1452 0 S 718 Actinobacillus equuli 1.48 1452 1452 S1 202948 Actinobacillus equuli subsp. haemolyticus 0.02 19 19 S 157339 Actinobacillus arthritidis 0.02 15 1 G 745 Pasteurella 0.01 14 14 S 747 Pasteurella multocida 0.01 14 0 G 2899790 Mergibacter 0.01 14 14 S 221402 Mergibacter septicus 0.01 5 0 G 75984 Mannheimia 0.00 2 2 S 75985 Mannheimia haemolytica 0.00 2 2 S 85402 Mannheimia granulomatis 0.00 1 1 S 85404 Mannheimia varigena 0.00 2 0 G 724 Haemophilus 0.00 1 1 S 727 Haemophilus influenzae 0.00 1 1 S 729 Haemophilus parainfluenzae 0.00 2 2 G 292486 Avibacterium 0.00 2 0 G 155493 Gallibacterium 0.00 2 2 S 750 Gallibacterium anatis 1.09 1063 0 O 135623 Vibrionales 1.09 1063 87 F 641 Vibrionaceae 0.84 821 11 G 662 Vibrio 0.53 518 0 S 52443 Vibrio tapetis 0.53 518 518 S1 1671868 Vibrio tapetis subsp. tapetis 0.15 145 145 S 666 Vibrio cholerae 0.05 45 0 G1 2614977 unclassified Vibrio 0.04 39 39 S 2661921 Vibrio sp. THAF191c 0.00 4 4 S 2661922 Vibrio sp. THAF191d 0.00 1 1 S 2819103 Vibrio sp. SCSIO 43009 0.00 1 1 S 2785746 Vibrio sp. VB16 0.04 43 43 S 2572923 Vibrio taketomensis 0.04 36 0 G1 717610 Vibrio harveyi group 0.03 33 30 S 670 Vibrio parahaemolyticus 0.00 3 3 S1 745023 Vibrio parahaemolyticus 10329 0.00 2 2 S 669 Vibrio harveyi 0.00 1 1 S 663 Vibrio alginolyticus 0.01 7 0 G1 87806 environmental samples 0.01 7 7 S 114054 uncultured Vibrio sp. 0.01 6 0 S 672 Vibrio vulnificus 0.01 6 6 S1 914127 Vibrio vulnificus MO6-24/O 0.01 5 5 S 104609 Vibrio penaeicida 0.00 3 0 G1 1891919 Vibrio oreintalis group 0.00 3 3 S 29498 Vibrio tubiashii 0.00 1 0 S 435912 Vibrio porteresiae 0.00 1 1 S1 1123496 Vibrio porteresiae DSM 19223 0.00 1 1 S 29495 Vibrio navarrensis 0.15 148 0 G 657 Photobacterium 0.11 108 34 S 553611 Photobacterium leiognathi 0.08 74 74 S1 48408 Photobacterium leiognathi subsp. mandapamensis 0.04 37 0 S 38293 Photobacterium damselae 0.03 28 28 S1 38294 Photobacterium damselae subsp. piscicida 0.01 9 9 S1 85581 Photobacterium damselae subsp. damselae 0.00 3 3 G1 2628852 unclassified Photobacterium 0.01 6 0 G 511678 Aliivibrio 0.01 6 0 S 40269 Aliivibrio salmonicida 0.01 6 6 S1 316275 Aliivibrio salmonicida LFI1238 0.00 1 0 G 188143 Enterovibrio 0.00 1 1 S 1927128 Candidatus Enterovibrio luxaltus 0.97 954 0 O 135624 Aeromonadales 0.97 953 125 F 84642 Aeromonadaceae 0.55 537 5 G 642 Aeromonas 0.45 441 441 S 654 Aeromonas veronii 0.04 44 44 S 652 Aeromonas schubertii 0.03 34 0 G1 257493 unclassified Aeromonas 0.03 32 32 S 2560029 Aeromonas sp. 2692-1 0.00 2 2 S 2920537 Aeromonas sp. 19NY04SH05-1 0.01 8 8 S 648 Aeromonas caviae 0.00 4 4 S 645 Aeromonas salmonicida 0.00 1 1 S 644 Aeromonas hydrophila 0.27 266 0 G 225143 Oceanisphaera 0.27 266 266 S 1903694 Oceanisphaera avium 0.03 25 1 G 43947 Tolumonas 0.02 24 24 S 43948 Tolumonas auensis 0.00 1 0 F 83763 Succinivibrionaceae 0.00 1 0 G 83770 Succinivibrio 0.00 1 1 S 83771 Succinivibrio dextrinosolvens 0.73 715 0 O 2887326 Moraxellales 0.73 715 28 F 468 Moraxellaceae 0.62 610 30 G 469 Acinetobacter 0.54 533 0 G1 909768 Acinetobacter calcoaceticus/baumannii complex 0.40 391 391 S 470 Acinetobacter baumannii 0.14 140 139 S 48296 Acinetobacter pittii 0.00 1 1 S1 871585 Acinetobacter pittii PHEA-2 0.00 2 2 S 106654 Acinetobacter nosocomialis 0.02 17 13 G1 196816 unclassified Acinetobacter 0.00 1 1 S 2714110 Acinetobacter sp. Marseille-Q1620 0.00 1 1 S 2919376 Acinetobacter sp. AOR07_HL 0.00 1 1 S 3151496 Acinetobacter sp. ANC 7955 0.00 1 1 S 2004644 Acinetobacter sp. WCHA45 0.02 16 16 S 202956 Acinetobacter towneri 0.01 12 12 S 40214 Acinetobacter johnsonii 0.00 1 1 S 756892 Acinetobacter indicus 0.00 1 0 S 52133 Acinetobacter venetianus 0.00 1 1 S1 1197884 Acinetobacter venetianus VE-C3 0.06 54 0 G 475 Moraxella 0.04 42 42 S 2904120 Moraxella nasibovis 0.01 12 12 S 90241 Moraxella lincolnii 0.02 20 11 G 497 Psychrobacter 0.01 9 9 G1 196806 unclassified Psychrobacter 0.00 3 0 G 2824158 Aquirhabdus 0.00 3 3 S 2283318 Aquirhabdus parva 0.46 447 1 O 135622 Alteromonadales 0.20 196 1 F 267890 Shewanellaceae 0.20 194 32 G 22 Shewanella 0.08 80 80 S 62322 Shewanella baltica 0.04 38 38 S 2018305 Shewanella bicestrii 0.03 31 31 S 712036 Shewanella dokdonensis 0.01 12 10 G1 196818 unclassified Shewanella 0.00 2 2 S 2601269 Shewanella sp. YLB-09 0.00 1 1 S 2520507 Shewanella maritima 0.00 1 0 G 2547964 Parashewanella 0.00 1 1 S 2547970 Parashewanella tropica 0.18 174 7 F 72275 Alteromonadaceae 0.17 163 0 F1 2903219 Alteromonas/Salinimonas group 0.17 163 0 G 226 Alteromonas 0.17 163 0 G1 2614992 unclassified Alteromonas 0.17 162 162 S 2267264 Alteromonas sp. RKMC-009 0.00 1 1 S 2961948 Alteromonas sp. LMIT006 0.00 2 1 G 1172191 Catenovulum 0.00 1 1 S 1740262 Catenovulum sediminis 0.00 1 0 G 2894574 Saccharobesus 0.00 1 1 S 2172099 Saccharobesus litoralis 0.00 1 0 G 2905123 Paraneptunicella 0.00 1 1 S 2831148 Paraneptunicella aestuarii 0.05 50 0 F 267888 Pseudoalteromonadaceae 0.03 26 0 G 53246 Pseudoalteromonas 0.03 26 0 G1 194690 unclassified Pseudoalteromonas 0.02 22 22 S 2785910 Pseudoalteromonas sp. A41-2 0.00 4 4 S 649161 Pseudoalteromonas sp. 3J6 0.02 24 0 G 2834759 Flocculibacter 0.02 24 24 S 2744479 Flocculibacter collagenilyticus 0.02 22 3 F 267893 Idiomarinaceae 0.02 17 0 G 2800384 Pseudidiomarina 0.02 17 17 S 1940690 Pseudidiomarina andamanensis 0.00 2 1 G 135575 Idiomarina 0.00 1 1 S 135577 Idiomarina loihiensis 0.00 3 0 F 267892 Ferrimonadaceae 0.00 3 3 G 44011 Ferrimonas 0.00 1 0 F 267891 Moritellaceae 0.00 1 0 G 58050 Moritella 0.00 1 0 S 90736 Moritella marina 0.00 1 1 S1 1202962 Moritella marina ATCC 15381 0.42 410 0 O 72274 Pseudomonadales 0.40 391 7 F 135621 Pseudomonadaceae 0.39 378 78 G 286 Pseudomonas 0.12 116 0 G1 136845 Pseudomonas putida group 0.12 114 114 S 303 Pseudomonas putida 0.00 2 2 S 78327 Pseudomonas mosselii 0.08 75 0 G1 196821 unclassified Pseudomonas 0.07 70 70 S 2025658 Pseudomonas sp. NS1(2017) 0.00 2 2 S 2762896 Pseudomonas sp. MPDS 0.00 1 1 S 3020843 Pseudomonas sp. Q1-7 0.00 1 1 S 1357074 Pseudomonas sp. LS44 0.00 1 1 S 2954092 Pseudomonas sp. FP2335 0.08 75 0 G1 136841 Pseudomonas aeruginosa group 0.08 75 75 S 287 Pseudomonas aeruginosa 0.01 14 0 G1 136843 Pseudomonas fluorescens group 0.01 9 0 S 47883 Pseudomonas synxantha 0.01 9 9 S1 96901 Pseudomonas synxantha BG33R 0.01 5 5 S 47878 Pseudomonas azotoformans 0.01 7 7 S 437900 Pseudomonas marincola 0.01 6 6 S 1302376 Candidatus Pseudomonas adelgestsugas 0.00 3 3 S 158627 Pseudomonas graminis 0.00 2 2 S 1198456 Pseudomonas guguanensis 0.00 1 1 S 2599595 Pseudomonas eucalypticola 0.00 1 1 S 1691904 Pseudomonas sediminis 0.00 2 0 G 1654787 Thiopseudomonas 0.00 2 2 S 1697053 Thiopseudomonas alkaliphila 0.00 2 0 G 2901164 Stutzerimonas 0.00 2 0 G1 136846 Stutzerimonas stutzeri group 0.00 2 2 S 74829 Stutzerimonas balearica 0.00 1 0 F1 351 Azotobacter group 0.00 1 1 G 352 Azotobacter 0.00 1 0 G 2901189 Halopseudomonas 0.00 1 1 S 1434072 Halopseudomonas salegens 0.01 7 0 F 3085096 Ketobacteraceae 0.01 7 0 G 2025617 Ketobacter 0.01 7 7 S 1917421 Ketobacter alkanivorans 0.01 6 0 F 2887365 Marinobacteraceae 0.01 6 6 G 2742 Marinobacter 0.01 6 0 F 3085095 Pseudohongiellaceae 0.01 6 0 G 1524249 Pseudohongiella 0.01 6 6 S 1249552 Pseudohongiella spirulinae 0.31 302 0 C1 118884 Gammaproteobacteria incertae sedis 0.30 294 0 G 1076625 Candidatus Steffania 0.30 294 294 S 1076626 Candidatus Steffania adelgidicola 0.01 6 0 G 198346 Candidatus Palibaumannia 0.01 6 5 S 186490 Candidatus Palibaumannia cicadellinicola 0.00 1 1 S1 374463 Baumannia cicadellinicola str. Hc (Homalodisca coagulata) 0.00 1 0 G 204619 Candidatus Nardonella 0.00 1 1 S 1972134 endosymbiont of Sipalinus gigas 0.00 1 0 F 412032 Celerinatantimonadaceae 0.00 1 0 G 412033 Celerinatantimonas 0.00 1 1 S 412034 Celerinatantimonas diazotrophica 0.18 180 0 O 135613 Chromatiales 0.18 172 6 F 1046 Chromatiaceae 0.08 75 2 G 85072 Allochromatium 0.07 72 72 S 553982 Allochromatium tepidum 0.00 1 0 S 1049 Allochromatium vinosum 0.00 1 1 S1 572477 Allochromatium vinosum DSM 180 0.03 34 0 G 156885 Thioflavicoccus 0.03 34 0 S 80679 Thioflavicoccus mobilis 0.03 34 34 S1 765912 Thioflavicoccus mobilis 8321 0.03 25 0 G 85076 Marichromatium 0.03 25 0 S 37487 Marichromatium purpuratum 0.03 25 25 S1 765910 Marichromatium purpuratum 984 0.02 17 17 G 1056 Thiocapsa 0.01 10 10 G 61593 Thiorhodovibrio 0.00 3 0 G 2828366 Caldichromatium 0.00 3 3 S 2699430 Caldichromatium japonicum 0.00 1 0 G 67575 Rheinheimera 0.00 1 0 G1 115860 unclassified Rheinheimera 0.00 1 1 S 1763998 Rheinheimera sp. F8 0.00 1 0 G 85073 Thermochromatium 0.00 1 0 S 1050 Thermochromatium tepidum 0.00 1 1 S1 316276 Thermochromatium tepidum ATCC 43061 0.01 8 0 F 72276 Ectothiorhodospiraceae 0.01 5 2 G 1335745 Spiribacter 0.00 3 3 S 2182432 Spiribacter halobius 0.00 1 0 G 133193 Alkalilimnicola 0.00 1 0 S 351052 Alkalilimnicola ehrlichii 0.00 1 1 S1 187272 Alkalilimnicola ehrlichii MLHE-1 0.00 1 0 G 233099 Ectothiorhodosinus 0.00 1 1 S 233100 Ectothiorhodosinus mongolicus 0.00 1 1 G 1765964 Acidihalobacter 0.18 177 0 O 135614 Lysobacterales 0.18 174 1 F 32033 Lysobacteraceae 0.16 153 0 G 338 Xanthomonas 0.16 153 153 S 29447 Xanthomonas albilineans 0.02 17 17 G 83618 Pseudoxanthomonas 0.00 3 3 G 68 Lysobacter 0.00 3 1 F 1775411 Rhodanobacteraceae 0.00 1 1 G 231454 Dyella 0.00 1 0 G 242605 Luteibacter 0.00 1 1 S 2911539 Luteibacter aegosomatissinici 0.16 153 1 O 135619 Oceanospirillales 0.13 123 0 F 135620 Oceanospirillaceae 0.06 59 0 G 459520 Neptuniibacter 0.06 59 59 S 651666 Neptuniibacter halophilus 0.05 49 0 G 28253 Marinomonas 0.05 49 49 S 2773454 Marinomonas algicola 0.01 13 12 G 515417 Amphritea 0.00 1 0 G1 981604 environmental samples 0.00 1 1 S 981605 uncultured Amphritea sp. 0.00 1 0 G 48075 Marinobacterium 0.00 1 1 S 48076 Marinobacterium iners 0.00 1 0 G 75687 Neptunomonas 0.00 1 0 S 417574 Neptunomonas japonica 0.00 1 1 S1 1441457 Neptunomonas japonica JAMM 1380 0.01 14 4 F 28256 Halomonadaceae 0.01 8 1 F1 114403 Zymobacter group 0.01 7 0 G 235572 Candidatus Portiera 0.01 7 7 S 91844 Candidatus Portiera aleyrodidarum 0.00 2 1 G 2745 Halomonas 0.00 1 1 G1 2609666 unclassified Halomonas 0.01 8 0 F 2823145 Pleioneaceae 0.01 8 0 G 1502941 Pleionea 0.01 8 8 S 3070815 Pleionea litopenaei 0.01 6 0 F 224379 Hahellaceae 0.01 6 5 G 158481 Hahella 0.00 1 0 S 158327 Hahella chejuensis 0.00 1 1 S1 349521 Hahella chejuensis KCTC 2396 0.00 1 0 F 224372 Alcanivoracaceae 0.00 1 1 G 3020832 Alloalcanivorax 0.06 55 0 O 72273 Thiotrichales 0.04 41 24 F 135616 Piscirickettsiaceae 0.01 10 0 G 2781121 Thiosulfatimonas 0.01 10 10 S 2675054 Thiosulfatimonas sediminis 0.01 6 0 G 933 Thiomicrospira 0.01 6 0 G1 2643099 unclassified Thiomicrospira 0.01 6 6 S 3035472 Thiomicrospira sp. R3 0.00 1 0 G 2039723 Thiomicrorhabdus 0.00 1 0 G1 2636650 unclassified Thiomicrorhabdus 0.00 1 1 S 2039724 Thiomicrorhabdus sp. 0.01 11 0 F 135617 Thiotrichaceae 0.01 10 0 G 1030 Thiothrix 0.01 10 10 S 525917 Thiothrix lacustris 0.00 1 0 G 1021 Beggiatoa 0.00 1 1 S 288004 Beggiatoa leptomitoformis 0.00 2 0 F 34064 Francisellaceae 0.00 2 0 G 262 Francisella 0.00 2 2 S 2249302 Francisella marina 0.00 1 0 F 2056687 Fastidiosibacteraceae 0.00 1 0 G 2056696 Cysteiniphilum 0.00 1 0 G1 2610889 unclassified Cysteiniphilum 0.00 1 1 S 2975055 Cysteiniphilum sp. QT6929 0.04 40 0 O 3084968 Thiohalomonadales 0.04 40 0 F 3084969 Thiohalomonadaceae 0.04 40 0 G 2034504 Sulfurivermis 0.04 40 40 S 1972068 Sulfurivermis fontis 0.04 39 0 O 118969 Legionellales 0.03 29 0 F 444 Legionellaceae 0.03 29 1 G 445 Legionella 0.02 22 0 S 446 Legionella pneumophila 0.02 22 20 S1 91891 Legionella pneumophila subsp. pneumophila 0.00 2 2 S2 272624 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 0.01 6 6 S 450 Legionella longbeachae 0.01 10 8 F 118968 Coxiellaceae 0.00 1 0 G 776 Coxiella 0.00 1 1 S 777 Coxiella burnetii 0.00 1 0 G 254245 Aquicella 0.00 1 1 S 254247 Aquicella siphonis 0.03 26 0 O 1706369 Cellvibrionales 0.01 10 0 F 1706375 Spongiibacteraceae 0.01 10 0 G 1084558 Oceanicoccus 0.01 10 10 S 716816 Oceanicoccus sagamiensis 0.01 7 5 F 1706372 Halieaceae 0.00 1 0 G 1217416 Halioglobus 0.00 1 1 S 930805 Halioglobus japonicus 0.00 1 0 G 2847769 Aequoribacter 0.00 1 1 S 2518989 Aequoribacter fuscus 0.01 6 0 F 1706373 Microbulbiferaceae 0.01 6 0 G 48073 Microbulbifer 0.00 4 4 S 86173 Microbulbifer elongatus 0.00 2 0 G1 2619833 unclassified Microbulbifer 0.00 2 2 S 2745199 Microbulbifer sp. YPW1 0.00 3 1 F 1706371 Cellvibrionaceae 0.00 1 0 G 2425 Teredinibacter 0.00 1 0 G1 2648457 unclassified Teredinibacter 0.00 1 1 S 3034506 Teredinibacter sp. KSP-S5-2 0.00 1 0 G 447467 Simiduia 0.00 1 0 G1 2639280 unclassified Simiduia 0.00 1 1 S 2909669 Simiduia sp. 21SJ11W-1 0.01 11 0 O 135618 Methylococcales 0.01 10 0 F 403 Methylococcaceae 0.00 4 0 G 1808977 Candidatus Methylospira 0.00 4 4 S 1808979 Candidatus Methylospira mobilis 0.00 3 0 G 73778 Methylocaldum 0.00 3 3 S 1432792 Methylocaldum marinum 0.00 2 0 G 3135206 Candidatus Methylocalor 0.00 2 2 S 3108543 Candidatus Methylocalor cossyra 0.00 1 0 G 1760987 Methylomagnum 0.00 1 1 S 1760988 Methylomagnum ishizawai 0.00 1 0 F 1486721 Methylothermaceae 0.00 1 1 G 1486720 Methylomarinovum 0.01 10 0 O 1240482 Orbales 0.01 10 0 F 1240483 Orbaceae 0.01 10 0 G 2894762 Zophobihabitans 0.01 10 10 S 1635327 Zophobihabitans entericus 0.01 8 0 O 135615 Cardiobacteriales 0.01 8 0 F 868 Cardiobacteriaceae 0.00 4 0 G 869 Dichelobacter 0.00 4 4 S 870 Dichelobacter nodosus 0.00 3 0 G 2717 Cardiobacterium 0.00 3 0 G1 2648856 unclassified Cardiobacterium 0.00 3 3 S 2866573 Cardiobacterium sp. Marseille-Q4385 0.00 1 0 G 13275 Suttonella 0.00 1 0 G1 2908647 unclassified Suttonella 0.00 1 1 S 2908648 Suttonella sp. R2A3 0.00 4 0 O 1775403 Nevskiales 0.00 4 0 F 568386 Nevskiaceae 0.00 2 0 G 1861863 Sinimarinibacterium 0.00 2 0 G1 2621506 unclassified Sinimarinibacterium 0.00 2 2 S 2698684 Sinimarinibacterium sp. NLF-5-8 0.00 1 0 G 413435 Solimonas 0.00 1 0 G1 2637139 unclassified Solimonas 0.00 1 1 S 2303331 Solimonas sp. K1W22B-7 0.00 1 0 G 2893022 Flagellatimonas 0.00 1 1 S 2806210 Flagellatimonas centrodinii 0.00 4 0 C1 33811 unclassified Gammaproteobacteria 0.00 4 4 S 1248727 endosymbiont of unidentified scaly snail isolate Monju 0.00 1 0 O 1934945 Immundisolibacterales 0.00 1 0 F 1934946 Immundisolibacteraceae 0.00 1 0 G 1934947 Immundisolibacter 0.00 1 1 S 1810504 Immundisolibacter cernigliae 0.00 1 0 O 2887327 Kangiellales 0.00 1 0 F 1920240 Kangiellaceae 0.00 1 0 G 261963 Kangiella 0.00 1 1 S 1144748 Kangiella sediminilitoris 0.00 1 0 O 3085109 Thiohalobacterales 0.00 1 0 F 3085110 Thiohalobacteraceae 0.00 1 1 G 1273155 Thiohalobacter 1.01 989 309 C 28216 Betaproteobacteria 0.65 637 31 O 80840 Burkholderiales 0.43 422 14 F 80864 Comamonadaceae 0.40 391 390 G 80865 Delftia 0.00 1 1 S 180282 Delftia tsuruhatensis 0.01 12 1 G 283 Comamonas 0.01 9 9 S 2743470 Comamonas antarctica 0.00 1 1 S 363952 Comamonas thiooxydans 0.00 1 0 G1 2638500 unclassified Comamonas 0.00 1 1 S 2853257 Comamonas sp. Y33R10-2 0.00 2 0 G 28065 Rhodoferax 0.00 1 1 S 1484693 Rhodoferax saidenbachensis 0.00 1 0 G1 2627954 unclassified Rhodoferax 0.00 1 1 S 2822760 Rhodoferax sp. PAMC 29310 0.00 1 1 G 34072 Variovorax 0.00 1 0 G 47420 Hydrogenophaga 0.00 1 0 G1 2610897 unclassified Hydrogenophaga 0.00 1 1 S 2651974 Hydrogenophaga sp. BPS33 0.00 1 0 G 1436289 Candidatus Symbiobacter 0.00 1 0 S 1436290 Candidatus Symbiobacter mobilis 0.00 1 1 S1 946483 Candidatus Symbiobacter mobilis CR 0.15 144 5 F 119060 Burkholderiaceae 0.05 45 4 G 48736 Ralstonia 0.04 41 0 G1 3116862 Ralstonia solanacearum species complex 0.04 41 41 S 305 Ralstonia solanacearum 0.04 39 6 G 32008 Burkholderia 0.02 24 0 G1 111527 pseudomallei group 0.02 16 1 S 57975 Burkholderia thailandensis 0.02 15 15 S1 1249664 Burkholderia thailandensis 34 0.01 8 8 S 28450 Burkholderia pseudomallei 0.01 5 0 G1 87882 Burkholderia cepacia complex 0.00 2 2 S 87883 Burkholderia multivorans 0.00 2 2 S 488447 Burkholderia contaminans 0.00 1 1 S 95485 Burkholderia stabilis 0.00 4 0 G1 2613784 unclassified Burkholderia 0.00 4 4 S 1494466 Burkholderia sp. FERM BP-3421 0.02 20 1 G 106589 Cupriavidus 0.02 18 18 S 164546 Cupriavidus taiwanensis 0.00 1 1 S 119219 Cupriavidus metallidurans 0.02 16 0 G 1822464 Paraburkholderia 0.02 15 15 S 2571748 Paraburkholderia acidisoli 0.00 1 0 S 261302 Paraburkholderia phytofirmans 0.00 1 1 S1 1417228 Paraburkholderia phytofirmans OLGA172 0.02 15 0 G 2038280 Robbsia 0.02 15 0 G1 2636574 unclassified Robbsia 0.02 15 15 S 3149231 Robbsia sp. KACC 23696 0.00 3 0 G 2571159 Mycetohabitans 0.00 3 3 S 417203 Mycetohabitans endofungorum 0.00 1 0 G 47670 Lautropia 0.00 1 1 S 47671 Lautropia mirabilis 0.02 24 7 F 75682 Oxalobacteraceae 0.01 8 4 G 963 Herbaspirillum 0.00 4 4 S 863372 Herbaspirillum huttiense 0.01 5 2 F1 2895353 Telluria group 0.00 3 1 G 149698 Massilia 0.00 1 1 S 457921 Massilia varians 0.00 1 0 G1 2609279 unclassified Massilia 0.00 1 1 S 3126507 Massilia sp. W12 0.00 2 2 G 29580 Janthinobacterium 0.00 2 0 G 401469 Undibacterium 0.00 2 2 G1 2630295 unclassified Undibacterium 0.01 7 0 F 506 Alcaligenaceae 0.00 3 0 G 1472344 Basilea 0.00 3 0 S 1472345 Basilea psittacipulmonis 0.00 3 3 S1 1072685 Basilea psittacipulmonis DSM 24701 0.00 2 0 G 152267 Pigmentiphaga 0.00 2 2 S 1940612 Pigmentiphaga aceris 0.00 1 0 G 517 Bordetella 0.00 1 1 S 519 Bordetella parapertussis 0.00 1 0 G 222 Achromobacter 0.00 1 1 S 217204 Achromobacter insolitus 0.01 7 0 O1 224471 Burkholderiales genera incertae sedis 0.01 7 6 G 32012 Thiomonas 0.00 1 1 S 926 Thiomonas intermedia 0.00 2 0 F 2975441 Sphaerotilaceae 0.00 1 0 G 28067 Rubrivivax 0.00 1 0 S 28068 Rubrivivax gelatinosus 0.00 1 1 S1 983917 Rubrivivax gelatinosus IL144 0.00 1 0 G 196013 Caldimonas 0.00 1 1 S 376175 Schlegelella aquatica 0.02 21 2 O 206351 Neisseriales 0.02 15 7 F 481 Neisseriaceae 0.00 4 0 G 2593687 Aquella 0.00 4 4 S 2067065 Aquella oligotrophica 0.00 1 1 G 482 Neisseria 0.00 1 0 G 538 Eikenella 0.00 1 1 S 539 Eikenella corrodens 0.00 1 0 G 334107 Conchiformibius 0.00 1 1 S 153493 Conchiformibius steedae 0.00 1 0 G 2898489 Paralysiella 0.00 1 1 S 2809020 Paralysiella testudinis 0.00 3 0 F 2897176 Aquaspirillaceae 0.00 3 0 G 168470 Laribacter 0.00 3 0 S 168471 Laribacter hongkongensis 0.00 3 3 S1 557598 Laribacter hongkongensis HLHK9 0.00 1 1 F 2897177 Chitinibacteraceae 0.02 16 0 C1 119066 Betaproteobacteria incertae sedis 0.01 9 0 G 1301080 Candidatus Nasuia 0.01 9 9 S 1160784 Candidatus Nasuia deltocephalinicola 0.01 7 0 G 1381133 Candidatus Profftella 0.01 6 6 S 2661583 Candidatus Profftella armatura (Diaphorina cf. continua) 0.00 1 1 S 669502 Candidatus Profftella armatura 0.01 6 1 O 32003 Nitrosomonadales 0.01 5 0 F 32011 Methylophilaceae 0.01 5 0 G 359407 Methylotenera 0.01 5 0 S 359408 Methylotenera mobilis 0.01 5 5 S1 583345 Methylotenera mobilis JLW8 0.89 871 44 C 28211 Alphaproteobacteria 0.54 524 17 O 356 Hyphomicrobiales 0.32 314 0 F 118882 Brucellaceae 0.32 314 291 F1 2826938 Brucella/Ochrobactrum group 0.02 23 9 G 234 Brucella 0.01 5 2 S 29459 Brucella melitensis 0.00 3 0 S1 645169 Brucella melitensis bv. 2 0.00 3 3 S2 520465 Brucella melitensis bv. 2 str. 63/9 0.01 5 5 S 94625 Brucella intermedia 0.00 3 0 G1 2632610 unclassified Brucella 0.00 2 2 S 2886044 Brucella sp. JSBI001 0.00 1 1 S 3142977 Brucella sp. BE17 0.00 1 0 S 235 Brucella abortus 0.00 1 0 S1 1567505 Brucella abortus bv. 9 0.00 1 1 S2 520455 Brucella abortus bv. 9 str. C68 0.07 67 0 F 2813035 Parvibaculaceae 0.06 55 0 G 256616 Parvibaculum 0.06 55 0 S 256618 Parvibaculum lavamentivorans 0.06 55 55 S1 402881 Parvibaculum lavamentivorans DS-1 0.01 12 0 G 444432 Anderseniella 0.01 12 0 G1 2614933 unclassified Anderseniella 0.01 12 12 S 1922226 Anderseniella sp. Alg231-50 0.05 52 1 F 82115 Rhizobiaceae 0.03 27 0 F1 227292 Sinorhizobium/Ensifer group 0.03 27 0 G 28105 Sinorhizobium 0.03 27 2 S 382 Sinorhizobium meliloti 0.02 24 24 S1 1041157 Sinorhizobium meliloti WSM1022 0.00 1 1 S1 693982 Sinorhizobium meliloti AK83 0.02 21 1 F1 227290 Rhizobium/Agrobacterium group 0.02 19 5 G 379 Rhizobium 0.01 14 0 S 56730 Rhizobium gallicum 0.01 14 0 S1 142627 Rhizobium gallicum bv. gallicum 0.01 14 14 S2 1041138 Rhizobium gallicum bv. gallicum R602sp 0.00 1 0 G 1612611 Pararhizobium 0.00 1 1 G1 2643050 unclassified Pararhizobium 0.00 3 1 G 34019 Liberibacter 0.00 1 1 S 34021 Candidatus Liberibacter asiaticus 0.00 1 0 S 309868 Candidatus Liberibacter americanus 0.00 1 1 S1 1261131 Candidatus Liberibacter americanus str. Sao Paulo 0.03 31 25 F 41294 Nitrobacteraceae 0.01 6 2 G 374 Bradyrhizobium 0.00 2 0 G1 2631580 unclassified Bradyrhizobium 0.00 2 2 S 3039153 Bradyrhizobium sp. CB1650 0.00 1 1 S 1355477 Bradyrhizobium diazoefficiens 0.00 1 1 S 1325095 Bradyrhizobium guangzhouense 0.01 11 0 F 69277 Phyllobacteriaceae 0.01 9 0 G 2911176 Aquibium 0.01 9 9 S 1670800 Aquibium oceanicum 0.00 1 0 G 68287 Mesorhizobium 0.00 1 0 G1 325217 unclassified Mesorhizobium 0.00 1 1 S 2584466 Mesorhizobium sp. 8 0.00 1 0 G 449972 Chelativorans 0.00 1 0 G1 2643807 unclassified Chelativorans 0.00 1 1 S 3028735 Chelativorans sp. AA-79 0.01 6 3 F 335928 Xanthobacteraceae 0.00 2 0 G 99 Ancylobacter 0.00 2 2 S 223390 Ancylobacter polymorphus 0.00 1 0 G 279 Xanthobacter 0.00 1 1 S 2528964 Xanthobacter dioxanivorans 0.01 5 1 F 119045 Methylobacteriaceae 0.00 2 1 G 407 Methylobacterium 0.00 1 0 S 31998 Methylobacterium radiotolerans 0.00 1 1 S1 426355 Methylobacterium radiotolerans JCM 2831 0.00 2 1 G 186650 Microvirga 0.00 1 1 S 1882682 Microvirga ossetica 0.00 4 0 F 2831106 Devosiaceae 0.00 3 1 G 46913 Devosia 0.00 2 1 G1 196773 unclassified Devosia 0.00 1 1 S 1736675 Devosia sp. A16 0.00 1 0 G 623276 Maritalea 0.00 1 1 S 454601 Maritalea myrionectae 0.00 4 0 F 2821832 Stappiaceae 0.00 3 0 G 150830 Roseibium 0.00 3 0 G1 1936170 environmental samples 0.00 3 3 S 1936171 uncultured Roseibium sp. 0.00 1 0 G 1406135 Breoghania 0.00 1 0 G1 2624130 unclassified Breoghania 0.00 1 1 S 2065378 Breoghania sp. 0.00 4 0 F 45401 Hyphomicrobiaceae 0.00 4 0 G 1484898 Methyloceanibacter 0.00 4 0 G1 2617503 unclassified Methyloceanibacter 0.00 4 4 S 2170729 Methyloceanibacter sp. wino2 0.00 3 0 O1 119042 Hyphomicrobiales incertae sedis 0.00 2 0 G 212791 Enhydrobacter 0.00 2 0 G1 2632691 unclassified Enhydrobacter 0.00 2 2 S 1894999 Enhydrobacter sp. 0.00 1 0 G 2874214 Terrihabitans 0.00 1 1 S 708113 Terrihabitans soli 0.00 2 0 F 255475 Aurantimonadaceae 0.00 2 0 G 414371 Aureimonas 0.00 1 0 G1 2615206 unclassified Aureimonas 0.00 1 1 S 2816454 Aureimonas sp. OT7 0.00 1 1 S 2758041 Aureimonas mangrovi 0.00 2 0 F 3142785 Terrirubraceae 0.00 2 0 G 3142786 Terrirubrum 0.00 2 2 S 2895980 Terrarubrum flagellatum 0.00 1 0 F 45404 Beijerinckiaceae 0.00 1 0 G 1156568 Methylovirgula 0.00 1 0 G1 2640612 unclassified Methylovirgula 0.00 1 1 S 2293567 Methylovirgula sp. 4M-Z18 0.00 1 0 F 772 Bartonellaceae 0.00 1 0 G 773 Bartonella 0.00 1 0 G1 2645622 unclassified Bartonella 0.00 1 1 S 2759660 Bartonella sp. HY038 0.11 104 8 O 204457 Sphingomonadales 0.08 74 3 F 41297 Sphingomonadaceae 0.04 42 40 G 13687 Sphingomonas 0.00 1 1 S 1549858 Sphingomonas taxi 0.00 1 1 S 1541170 Sphingomonas morindae 0.02 22 5 G 165696 Novosphingobium 0.01 11 11 S 13688 Novosphingobium capsulatum 0.01 5 5 S 2728851 Novosphingobium olei 0.00 1 0 G1 2644732 unclassified Novosphingobium 0.00 1 1 S 3079861 Novosphingobium sp. ZN18A2 0.01 5 4 G 165697 Sphingopyxis 0.00 1 0 G1 2614943 unclassified Sphingopyxis 0.00 1 1 S 2482763 Sphingopyxis sp. YF1 0.00 2 2 G 1227948 Sphingomicrobium 0.02 17 1 F 335929 Erythrobacteraceae 0.01 13 13 G 2800681 Aurantiacibacter 0.00 2 1 F1 2800788 Erythrobacter/Porphyrobacter group 0.00 1 0 G 1111 Porphyrobacter 0.00 1 0 G1 2683265 unclassified Porphyrobacter 0.00 1 1 S 2003315 Porphyrobacter sp. CACIAM 03H1 0.00 1 1 G 1855416 Qipengyuania 0.01 5 0 F 2844881 Zymomonadaceae 0.01 5 0 G 541 Zymomonas 0.01 5 5 S 542 Zymomonas mobilis 0.10 101 0 O 204441 Rhodospirillales 0.06 61 0 F 2690195 Elioraeaceae 0.06 61 0 G 457933 Elioraea 0.06 61 61 S 2843330 Elioraea tepida 0.04 35 0 F 2844601 Stellaceae 0.04 35 0 G 93 Stella 0.04 35 35 S 94 Stella humosa 0.00 4 3 F 433 Acetobacteraceae 0.00 1 1 G 1602345 Parasaccharibacter 0.00 1 0 F 41295 Rhodospirillaceae 0.00 1 0 G 1263978 Candidatus Endolissoclinum 0.00 1 1 S 1263979 Candidatus Endolissoclinum faulkneri 0.04 40 0 O 2800060 Hyphomonadales 0.04 40 0 F 69657 Hyphomonadaceae 0.04 40 40 G 85 Hyphomonas 0.03 26 0 O 204458 Caulobacterales 0.03 26 0 F 76892 Caulobacteraceae 0.03 26 14 G 41275 Brevundimonas 0.01 12 0 G1 2622653 unclassified Brevundimonas 0.01 11 11 S 2560058 Brevundimonas sp. Bb-A 0.00 1 1 S 3015999 Brevundimonas sp. NIBR11 0.02 21 6 O 204455 Rhodobacterales 0.01 13 7 F 31989 Paracoccaceae 0.00 4 0 G 2683599 Paroceanicella 0.00 4 4 S 2579971 Paroceanicella profunda 0.00 1 0 G 1844015 Pontivivens 0.00 1 1 S 2789856 Pontivivens ytuae 0.00 1 0 G 285107 Thioclava 0.00 1 1 S 1549850 Thioclava electrotropha 0.00 2 0 F 2854170 Roseobacteraceae 0.00 2 0 G 2919626 Alloyangia 0.00 2 2 S 311180 Alloyangia pacifica 0.01 7 0 O 2066490 Emcibacterales 0.01 7 0 F 2066491 Emcibacteraceae 0.01 7 0 G 2943291 Pseudemcibacter 0.01 7 7 S 2857064 Pseudemcibacter aquimaris 0.00 2 0 O 1921002 Holosporales 0.00 2 0 F 44746 Holosporaceae 0.00 2 0 G 2654634 Candidatus Hydrogenosomobacter 0.00 2 2 S 2558174 Candidatus Hydrogenosomobacter endosymbioticus 0.00 1 0 O 766 Rickettsiales 0.00 1 1 F 942 Anaplasmataceae 0.00 1 1 O 362534 Kordiimonadales 0.02 19 0 C 1807140 Acidithiobacillia 0.02 19 0 O 225057 Acidithiobacillales 0.02 19 0 F 225058 Acidithiobacillaceae 0.02 19 19 G 119977 Acidithiobacillus 32.42 31731 28 D1 1783272 Terrabacteria group 31.82 31145 48 P 1239 Bacillota 31.54 30869 40 C 91061 Bacilli 19.66 19241 99 O 1385 Bacillales 18.65 18258 4 F 90964 Staphylococcaceae 18.64 18249 5118 G 1279 Staphylococcus 9.53 9324 9069 S 1280 Staphylococcus aureus 0.19 188 188 S1 1229492 Staphylococcus aureus 08BA02176 0.03 32 32 S1 548473 Staphylococcus aureus subsp. aureus TCH60 0.02 22 22 S1 273036 Staphylococcus aureus RF122 0.01 13 13 S1 985006 Staphylococcus aureus subsp. aureus LGA251 2.11 2070 2070 S 1290 Staphylococcus hominis 0.38 373 373 S 70255 Staphylococcus condimenti 0.32 312 312 S 1283 Staphylococcus haemolyticus 0.19 190 188 S 1282 Staphylococcus epidermidis 0.00 2 2 S1 176280 Staphylococcus epidermidis ATCC 12228 0.13 131 131 S 985002 Staphylococcus argenteus 0.13 128 0 G1 2815305 Staphylococcus intermedius group 0.13 123 123 S 283734 Staphylococcus pseudintermedius 0.01 5 5 S 53344 Staphylococcus delphini 0.13 124 124 S 170573 Staphylococcus pettenkoferi 0.12 120 120 S 28035 Staphylococcus lugdunensis 0.07 65 65 S 46126 Staphylococcus chromogenes 0.06 54 54 S 45972 Staphylococcus pasteuri 0.04 41 10 G1 91994 unclassified Staphylococcus 0.01 14 14 S 2989772 Staphylococcus sp. IVB6246 0.01 9 9 S 2929481 Staphylococcus sp. IVB6181 0.00 2 2 S 3020908 Staphylococcus sp. NRL 22/194 0.00 2 2 S 2583989 Staphylococcus sp. 17KM0847 0.00 2 2 S 2813777 Staphylococcus sp. SB1-57 0.00 2 2 S 2989766 Staphylococcus sp. IVB6214 0.04 40 40 S 2044912 Staphylococcus debuckii 0.04 39 22 S 29388 Staphylococcus capitis 0.02 17 17 S1 74703 Staphylococcus capitis subsp. urealyticus 0.04 38 38 S 1286 Staphylococcus simulans 0.02 17 17 S 29378 Staphylococcus arlettae 0.01 14 14 S 214473 Staphylococcus nepalensis 0.01 14 14 S 3051183 Staphylococcus hsinchuensis 0.01 11 11 S 46127 Staphylococcus felis 0.00 4 4 S 29385 Staphylococcus saprophyticus 0.00 4 4 S 1292 Staphylococcus warneri 0.00 4 4 S 2892440 Staphylococcus ratti 0.00 3 3 S 1295 Staphylococcus schleiferi 0.00 2 2 S 29380 Staphylococcus caprae 0.00 2 2 S 985762 Staphylococcus agnetis 0.00 2 2 S 201828 Staphylococcus casei 0.00 2 2 S 2912228 Staphylococcus shinii 0.00 2 2 S 246432 Staphylococcus equorum 0.00 1 1 S 29382 Staphylococcus cohnii 0.00 2 0 G 45669 Salinicoccus 0.00 2 0 G1 2628837 unclassified Salinicoccus 0.00 2 2 S 3136731 Salinicoccus sp. Bachu38 0.00 2 0 G 2803850 Mammaliicoccus 0.00 2 2 S 1296 Mammaliicoccus sciuri 0.00 1 1 G 489909 Nosocomiicoccus 0.83 811 97 F 186817 Bacillaceae 0.41 400 21 G 1386 Bacillus 0.18 174 8 G1 86661 Bacillus cereus group 0.05 47 0 G2 2750818 unclassified Bacillus cereus group 0.05 47 47 S 1892404 Bacillus sp. ABP14 0.04 42 29 S 1428 Bacillus thuringiensis 0.01 5 5 S1 180850 Bacillus thuringiensis serovar indiana 0.00 4 4 S1 1423143 Bacillus thuringiensis Bt18247 0.00 3 3 S1 412694 Bacillus thuringiensis str. Al Hakam 0.00 1 0 S1 29339 Bacillus thuringiensis serovar kurstaki 0.00 1 1 S2 1279365 Bacillus thuringiensis serovar kurstaki str. HD73 0.03 32 31 S 1392 Bacillus anthracis 0.00 1 1 S1 673518 Bacillus anthracis str. A16R 0.02 23 17 S 1396 Bacillus cereus 0.01 5 5 S1 1003239 Bacillus cereus C1L 0.00 1 1 S1 572264 Bacillus cereus 03BB102 0.02 19 19 S 64104 Bacillus pseudomycoides 0.00 2 0 S 1405 Bacillus mycoides 0.00 2 2 S1 315730 Bacillus mycoides KBAB4 0.00 1 1 S 2026191 Bacillus luti 0.16 152 4 G1 653685 Bacillus subtilis group 0.13 123 0 G2 1938374 Bacillus amyloliquefaciens group 0.11 107 106 S 492670 Bacillus velezensis 0.00 1 1 S1 1385727 Bacillus velezensis NAU-B3 0.01 13 13 S 1390 Bacillus amyloliquefaciens 0.00 3 3 S 659243 Bacillus siamensis 0.02 22 17 S 1423 Bacillus subtilis 0.00 4 4 S1 86029 Bacillus subtilis subsp. natto 0.00 1 0 S1 135461 Bacillus subtilis subsp. subtilis 0.00 1 1 S2 224308 Bacillus subtilis subsp. subtilis str. 168 0.00 2 2 S 1402 Bacillus licheniformis 0.00 1 1 S 96241 Bacillus spizizenii 0.04 36 0 G1 185979 unclassified Bacillus (in: firmicutes) 0.03 29 29 S 2841656 Bacillus sp. ZHX3 0.00 4 4 S 2874284 Bacillus sp. CRB-7 0.00 2 2 S 467262 Bacillus sp. T3 0.00 1 1 S 3077323 Bacillus sp. SI2 0.01 7 7 S 1983719 Bacillus shivajii 0.01 5 0 G1 1792192 Bacillus altitudinis complex 0.01 5 5 S 293387 Bacillus altitudinis 0.00 3 3 S 1408 Bacillus pumilus 0.00 1 1 S 2728853 Bacillus fonticola 0.00 1 1 S 2672567 Bacillus aquiflavi 0.07 65 65 G 1055323 Aeribacillus 0.06 57 0 G 400634 Lysinibacillus 0.05 49 49 S 2086577 Lysinibacillus timonensis 0.01 6 6 S 2590012 Lysinibacillus agricola 0.00 2 0 G1 2636778 unclassified Lysinibacillus 0.00 2 2 S 2954544 Lysinibacillus sp. FSL W7-1291 0.05 49 1 G 2800373 Priestia 0.05 48 47 S 1404 Priestia megaterium 0.00 1 1 S1 1006007 Priestia megaterium WSH-002 0.03 33 24 G 2837504 Heyndrickxia 0.01 8 8 S 1398 Heyndrickxia coagulans 0.00 1 1 S 38875 Heyndrickxia oleronia 0.03 26 0 G 175304 Lentibacillus 0.02 23 23 S 1472767 Lentibacillus amyloliquefaciens 0.00 2 0 G1 2614679 unclassified Lentibacillus 0.00 2 2 S 2518176 Lentibacillus sp. CBA3610 0.00 1 1 S 2911514 Lentibacillus daqui 0.02 16 15 G 2893057 Shouchella 0.00 1 1 S 79880 Shouchella clausii 0.01 12 0 G 2893056 Halalkalibacter 0.01 12 12 S 199441 Halalkalibacter krulwichiae 0.01 9 0 G 2005375 Alkalicoccus 0.01 9 9 S 1667239 Alkalicoccus halolimnae 0.01 7 0 G 2837510 Siminovitchia 0.01 7 7 S 254758 Siminovitchia fortis 0.01 6 0 G 1433999 Domibacillus 0.01 6 0 G1 2632383 unclassified Domibacillus 0.01 6 6 S 3077789 Domibacillus sp. DTU_2020_1001157_1_SI_ALB_TIR_016 0.01 5 0 G 129337 Geobacillus 0.00 2 2 S 1921421 Geobacillus genomosp. 3 0.00 2 0 G1 2642459 unclassified Geobacillus 0.00 2 2 S 1233873 Geobacillus sp. GHH01 0.00 1 0 S 33940 Geobacillus thermodenitrificans 0.00 1 1 S1 420246 Geobacillus thermodenitrificans NG80-2 0.00 4 0 G 2785518 Radiobacillus 0.00 4 4 S 2594883 Radiobacillus deserti 0.00 4 0 G 84406 Virgibacillus 0.00 3 3 S 447199 Virgibacillus salarius 0.00 1 1 S 163877 Virgibacillus necropolis 0.00 3 1 G 2685905 Salicibibacter 0.00 2 2 S 2743001 Salicibibacter cibi 0.00 2 0 G 351195 Salimicrobium 0.00 2 2 S 1230341 Salimicrobium jeotgali 0.00 2 2 G 182709 Oceanobacillus 0.00 2 0 G 2675234 Alkalihalobacillus 0.00 2 0 G1 2675276 unclassified Alkalihalobacillus 0.00 2 2 S 2926399 Alkalihalobacillus sp. AL-G 0.00 2 0 G 45667 Halobacillus 0.00 1 1 S 1570 Halobacillus halophilus 0.00 1 1 S 2932258 Halobacillus shinanisalinarum 0.00 1 0 G 2837506 Niallia 0.00 1 0 G1 2837522 unclassified Niallia 0.00 1 1 S 3082444 Niallia sp. XMNu-256 0.00 1 0 G 1494427 Tepidibacillus 0.00 1 1 S 3131995 Tepidibacillus marianensis 0.00 1 0 G 2893055 Halalkalibacterium (ex Joshi et al. 2022) 0.00 1 0 S 86665 Halalkalibacterium halodurans 0.00 1 1 S1 272558 Halalkalibacterium halodurans C-125 0.00 1 0 G 2893060 Alkalihalophilus 0.00 1 1 S 79885 Alkalihalophilus pseudofirmus 0.00 1 0 G 1400133 Allobacillus 0.00 1 1 S 570278 Allobacillus halotolerans 0.00 1 1 G 1221880 Psychrobacillus 0.00 1 0 G 482460 Sediminibacillus 0.00 1 1 S 2729421 Sediminibacillus dalangtanensis 0.00 1 0 G 3033930 Fervidibacillus 0.00 1 1 S 2980026 Fervidibacillus albus 0.00 1 0 G 200903 Paraliobacillus 0.00 1 1 S 2213194 Paraliobacillus zengyii 0.00 1 0 G 150247 Anoxybacillus 0.00 1 0 S 33934 Anoxybacillus flavithermus 0.00 1 1 S1 491915 Anoxybacillus flavithermus WK1 0.05 48 2 F 186822 Paenibacillaceae 0.04 38 4 G 44249 Paenibacillus 0.01 13 13 S 1406 Paenibacillus polymyxa 0.01 11 1 G1 185978 unclassified Paenibacillus 0.00 4 4 S 715179 Paenibacillus sp. sptzw28 0.00 4 4 S 2921460 Paenibacillus sp. FSL K6-1096 0.00 2 2 S 2921652 Paenibacillus sp. FSL R5-0636 0.00 4 4 S 61624 Paenibacillus mucilaginosus 0.00 1 1 S 3050112 Paenibacillus polygoni 0.00 1 1 S 682956 Paenibacillus jilunlii 0.00 1 1 S 49283 Paenibacillus thiaminolyticus 0.00 1 1 S 253703 Paenibacillus antarcticus 0.00 1 1 S 116718 Paenibacillus azoreducens 0.00 1 1 S 130049 Paenibacillus dendritiformis 0.00 3 0 F1 85151 Aneurinibacillus group 0.00 3 2 G 55079 Aneurinibacillus 0.00 1 0 G1 2642329 unclassified Aneurinibacillus 0.00 1 1 S 3022697 Aneurinibacillus sp. Ricciae_BoGa-3 0.00 3 0 G 329857 Cohnella 0.00 3 3 S 2507935 Cohnella abietis 0.00 2 1 G 55080 Brevibacillus 0.00 1 0 G1 2684853 unclassified Brevibacillus 0.00 1 1 S 2683193 Brevibacillus sp. 7WMA2 0.01 14 0 F 186820 Listeriaceae 0.01 13 0 G 1637 Listeria 0.01 7 0 S 1638 Listeria ivanovii 0.01 7 0 S1 202751 Listeria ivanovii subsp. ivanovii 0.01 7 7 S2 881621 Listeria ivanovii subsp. ivanovii PAM 55 0.01 6 6 S 1639 Listeria monocytogenes 0.00 1 0 G 2755 Brochothrix 0.00 1 1 S 2756 Brochothrix thermosphacta 0.01 5 0 F 186818 Planococcaceae 0.00 2 0 G 651660 Paenisporosarcina 0.00 2 2 S 2320858 Paenisporosarcina cavernae 0.00 1 1 G 1372 Planococcus 0.00 1 0 G 160795 Ureibacillus 0.00 1 1 S 367743 Ureibacillus thermophilus 0.00 1 1 G 648802 Rummeliibacillus 0.00 3 0 F 186823 Alicyclobacillaceae 0.00 3 0 G 29330 Alicyclobacillus 0.00 3 3 S 2931921 Alicyclobacillus mengziensis 0.00 1 0 F 186824 Thermoactinomycetaceae 0.00 1 0 G 1348505 Polycladomyces 0.00 1 1 S 1125966 Polycladomyces abyssicola 0.00 1 0 O1 539002 Bacillales incertae sedis 0.00 1 0 O2 539742 Bacillales Family XII. Incertae Sedis 0.00 1 1 G 33986 Exiguobacterium 0.00 1 0 F 539738 Gemellaceae 0.00 1 1 G 1378 Gemella 11.84 11588 12 O 186826 Lactobacillales 11.63 11383 0 F 81852 Enterococcaceae 11.63 11383 1 G 1350 Enterococcus 11.62 11374 11372 S 1351 Enterococcus faecalis 0.00 2 2 S1 1201292 Enterococcus faecalis ATCC 29212 0.01 5 5 S 1352 Enterococcus faecium 0.00 3 2 S 1354 Enterococcus hirae 0.00 1 1 S1 768486 Enterococcus hirae ATCC 9790 0.08 83 12 F 33958 Lactobacillaceae 0.03 26 13 G 46255 Weissella 0.01 12 12 S 137591 Weissella cibaria 0.00 1 1 S 1249 Weissella paramesenteroides 0.01 10 2 G 2767887 Ligilactobacillus 0.00 3 0 S 1622 Ligilactobacillus murinus 0.00 3 3 S1 1235801 Ligilactobacillus murinus ASF361 0.00 2 2 S 1605 Ligilactobacillus animalis 0.00 2 2 S 1606 Ligilactobacillus aviarius 0.00 1 1 S 1624 Ligilactobacillus salivarius 0.01 7 0 G 2759736 Lacticaseibacillus 0.01 5 5 S 3025672 Lacticaseibacillus pabuli 0.00 2 2 S 1597 Lacticaseibacillus paracasei 0.01 6 4 G 1243 Leuconostoc 0.00 1 1 S 1252 Leuconostoc carnosum 0.00 1 1 S 255248 Leuconostoc garlicum 0.01 5 2 G 1578 Lactobacillus 0.00 2 1 S 1584 Lactobacillus delbrueckii 0.00 1 0 S1 1585 Lactobacillus delbrueckii subsp. bulgaricus 0.00 1 1 S2 321956 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 0.00 1 1 S 2012495 Lactobacillus panisapium 0.00 4 3 G 2742598 Limosilactobacillus 0.00 1 1 S 1613 Limosilactobacillus fermentum 0.00 3 1 G 2767881 Fructilactobacillus 0.00 1 1 S 1614 Fructilactobacillus fructivorans 0.00 1 1 S 1625 Fructilactobacillus sanfranciscensis 0.00 2 1 G 1253 Pediococcus 0.00 1 0 G1 554805 unclassified Pediococcus 0.00 1 1 S 2962679 Pediococcus sp. AC40 0.00 2 0 G 2767842 Lactiplantibacillus 0.00 2 2 S 1590 Lactiplantibacillus plantarum 0.00 1 0 G 2930384 Periweissella 0.00 1 1 S 2506420 Periweissella cryptocerci 0.00 1 0 G 2767878 Bombilactobacillus 0.00 1 1 S 1303590 Bombilactobacillus bombi 0.00 1 1 G 2767893 Lentilactobacillus 0.00 1 0 G 2767892 Secundilactobacillus 0.00 1 1 S 176292 Secundilactobacillus malefermentans 0.00 1 0 G 2767884 Lapidilactobacillus 0.00 1 1 S 51664 Lapidilactobacillus dextrinicus 0.00 1 0 G 2767890 Paucilactobacillus 0.00 1 1 S 1296540 Paucilactobacillus nenjiangensis 0.08 76 1 F 1300 Streptococcaceae 0.07 73 8 G 1301 Streptococcus 0.05 48 45 S 1308 Streptococcus thermophilus 0.00 2 2 S1 767463 Streptococcus thermophilus ND03 0.00 1 1 S1 322159 Streptococcus thermophilus LMD-9 0.01 8 8 S 1314 Streptococcus pyogenes 0.00 3 3 S 1345 Streptococcus ferus 0.00 2 1 S 1313 Streptococcus pneumoniae 0.00 1 1 S1 869311 Streptococcus pneumoniae SPN032672 0.00 1 1 S 1348 Streptococcus parauberis 0.00 1 1 S 1501662 Streptococcus parasuis 0.00 1 0 G1 671232 Streptococcus anginosus group 0.00 1 1 S 1328 Streptococcus anginosus 0.00 1 1 S 1311 Streptococcus agalactiae 0.00 2 0 G 1357 Lactococcus 0.00 1 0 S 1363 Lactococcus garvieae 0.00 1 1 S1 1890280 Lactococcus garvieae subsp. garvieae 0.00 1 1 S 1366 Lactococcus raffinolactis 0.03 33 1 F 186827 Aerococcaceae 0.03 29 0 G 2862144 Ruoffia 0.03 29 29 S 87458 Ruoffia tabacinasalis 0.00 2 1 G 1375 Aerococcus 0.00 1 1 S 87541 Aerococcus christensenii 0.00 1 0 G 66831 Facklamia 0.00 1 1 S 178214 Facklamia hominis 0.00 1 0 F 186828 Carnobacteriaceae 0.00 1 0 G 117563 Granulicatella 0.00 1 1 S 46124 Granulicatella adiacens 0.12 118 0 C 1737404 Tissierellia 0.12 118 0 O 1737405 Tissierellales 0.12 117 0 F 1570339 Peptoniphilaceae 0.05 46 0 G 150022 Finegoldia 0.05 46 46 S 1260 Finegoldia magna 0.04 38 0 G 165779 Anaerococcus 0.04 38 0 G1 2614126 unclassified Anaerococcus 0.04 38 38 S 3036300 Anaerococcus sp. Marseille-Q7828 0.03 31 0 G 31983 Helcococcus 0.03 31 31 S 72026 Helcococcus ovis 0.00 2 2 G 162289 Peptoniphilus 0.00 1 0 F 2992719 Tepidimicrobiaceae 0.00 1 0 G 2794837 Schnuerera 0.00 1 0 S 45497 Schnuerera ultunensis 0.00 1 1 S1 1288971 [Clostridium] ultunense Esp 0.10 94 1 C 186801 Clostridia 0.06 60 1 O 186802 Eubacteriales 0.02 18 0 F 31979 Clostridiaceae 0.02 18 1 G 1485 Clostridium 0.01 6 6 S 1716543 Clostridium thermarum 0.00 4 4 S 1502 Clostridium perfringens 0.00 3 0 G1 2614128 unclassified Clostridium 0.00 3 3 S 2483110 Clostridium sp. JN-1 0.00 2 2 S 36839 Clostridium felsineum 0.00 1 1 S 1491 Clostridium botulinum 0.00 1 0 S 1542 Clostridium novyi 0.00 1 1 S1 386415 Clostridium novyi NT 0.01 12 0 F 216572 Oscillospiraceae 0.01 9 0 G 1263 Ruminococcus 0.01 5 5 S 2564099 Ruminococcus bovis 0.00 4 4 S 1161942 Ruminococcus champanellensis 0.00 2 0 G 459786 Oscillibacter 0.00 2 2 S 2763056 Oscillibacter hominis 0.00 1 0 G 35829 Acetivibrio 0.00 1 1 S 1515 Acetivibrio thermocellus 0.01 8 0 F 186806 Eubacteriaceae 0.01 8 8 G 33951 Acetobacterium 0.01 8 0 F 186807 Peptococcaceae 0.01 7 0 G 2924872 Acididesulfobacillus 0.01 7 7 S 1561005 Acididesulfobacillus acetoxydans 0.00 1 0 G 2916693 Desulforamulus 0.00 1 0 S 59610 Desulforamulus reducens 0.00 1 1 S1 349161 Desulforamulus reducens MI-1 0.01 6 0 F 2937909 Desulfitobacteriaceae 0.01 6 6 G 56112 Dehalobacter 0.00 3 3 F 31984 Heliobacteriaceae 0.00 3 0 O1 538999 Eubacteriales incertae sedis 0.00 2 0 G 1392389 Intestinimonas 0.00 2 2 S 1297617 Intestinimonas butyriciproducens 0.00 1 0 F 539000 Clostridiales Family XVII. Incertae Sedis 0.00 1 1 G 73918 Thermaerobacter 0.00 1 0 F 3085642 Butyricicoccaceae 0.00 1 0 G 2048137 Agathobaculum 0.00 1 0 G1 2620324 unclassified Agathobaculum 0.00 1 1 S 3079302 Agathobaculum sp. NTUH-O15-33 0.01 13 0 O 53433 Halanaerobiales 0.01 13 0 F 53434 Halobacteroidaceae 0.01 13 0 G 42417 Halobacteroides 0.01 13 0 S 42422 Halobacteroides halobius 0.01 13 13 S1 748449 Halobacteroides halobius DSM 5150 0.01 10 0 O 3085636 Lachnospirales 0.01 9 1 F 186803 Lachnospiraceae 0.01 5 0 G 572511 Blautia 0.01 5 0 G1 2648079 unclassified Blautia 0.01 5 5 S 2479767 Blautia sp. SC05B48 0.00 2 0 G 841 Roseburia 0.00 2 2 S 301301 Roseburia hominis 0.00 1 0 G 2383 Candidatus Epulonipiscium 0.00 1 1 S 420336 Candidatus Epulonipiscium viviparus 0.00 1 0 F 3018741 Cellulosilyticaceae 0.00 1 1 G 698776 Cellulosilyticum 0.00 4 0 O 68295 Thermoanaerobacterales 0.00 3 0 F 543372 Thermoanaerobacterales Family IV. Incertae Sedis 0.00 3 0 G 252965 Mahella 0.00 3 0 S 252966 Mahella australiensis 0.00 3 3 S1 697281 Mahella australiensis 50-1 BON 0.00 1 0 F 186814 Thermoanaerobacteraceae 0.00 1 1 G 28895 Thermoanaerobacterium 0.00 3 0 O 3082720 Peptostreptococcales 0.00 3 0 F 186804 Peptostreptococcaceae 0.00 3 0 G 1849822 Paraclostridium 0.00 2 2 S 1490 Paraclostridium bifermentans 0.00 1 1 S 1505 Paraclostridium sordellii 0.00 3 0 O 3085656 Monoglobales 0.00 3 0 F 3085657 Monoglobaceae 0.00 3 0 G 2039302 Monoglobus 0.00 3 3 S 1981510 Monoglobus pectinilyticus 0.02 15 0 C 909932 Negativicutes 0.01 14 0 O 1843489 Veillonellales 0.01 14 0 F 31977 Veillonellaceae 0.01 12 1 G 29465 Veillonella 0.01 10 10 S 29466 Veillonella parvula 0.00 1 1 S 423477 Veillonella rogosae 0.00 2 1 G 39948 Dialister 0.00 1 1 S 39950 Dialister pneumosintes 0.00 1 0 O 909929 Selenomonadales 0.00 1 0 F 1843491 Selenomonadaceae 0.00 1 0 G 970 Selenomonas 0.00 1 0 G1 2637378 unclassified Selenomonas 0.00 1 1 S 3095337 Selenomonas sp. TAMA-11512 0.00 1 0 C 526524 Erysipelotrichia 0.00 1 0 O 526525 Erysipelotrichales 0.00 1 0 F 2810281 Turicibacteraceae 0.00 1 1 G 191303 Turicibacter 0.48 470 0 P 201174 Actinomycetota 0.46 455 42 C 1760 Actinomycetes 0.20 200 0 O 85007 Mycobacteriales 0.18 179 0 F 1653 Corynebacteriaceae 0.18 179 70 G 1716 Corynebacterium 0.09 84 84 S 38284 Corynebacterium accolens 0.01 5 3 S 1718 Corynebacterium glutamicum 0.00 2 2 S1 1079988 Corynebacterium glutamicum ATCC 14067 0.01 5 5 S 1758466 Corynebacterium faecale 0.00 2 2 S 161895 Corynebacterium phocae 0.00 2 0 S 1717 Corynebacterium diphtheriae 0.00 2 2 S1 257309 Corynebacterium diphtheriae NCTC 13129 0.00 2 2 S 1719 Corynebacterium pseudotuberculosis 0.00 2 2 S 2055947 Corynebacterium heidelbergense 0.00 2 2 S 53374 Corynebacterium coyleae 0.00 2 2 S 35757 Corynebacterium cystitidis 0.00 1 1 S 679663 Corynebacterium canis 0.00 1 1 S 43768 Corynebacterium matruchotii 0.00 1 1 S 2768834 Corynebacterium zhongnanshanii 0.01 10 0 F 1762 Mycobacteriaceae 0.01 9 1 G 1763 Mycobacterium 0.01 7 0 G1 77643 Mycobacterium tuberculosis complex 0.01 7 7 S 1773 Mycobacterium tuberculosis 0.00 1 1 S 1768 Mycobacterium kansasii 0.00 1 1 G 1866885 Mycolicibacterium 0.01 10 0 F 85025 Nocardiaceae 0.01 10 0 G 1827 Rhodococcus 0.01 9 9 S 37919 Rhodococcus opacus 0.00 1 0 G1 2840174 Rhodococcus erythropolis group 0.00 1 1 S 1833 Rhodococcus erythropolis 0.00 1 0 F 2805586 Lawsonellaceae 0.00 1 0 G 1847725 Lawsonella 0.00 1 1 S 1528099 Lawsonella clevelandensis 0.11 103 6 O 85009 Propionibacteriales 0.10 95 4 F 31957 Propionibacteriaceae 0.09 88 4 G 1912216 Cutibacterium 0.09 84 84 S 1747 Cutibacterium acnes 0.00 2 0 G 1912215 Acidipropionibacterium 0.00 2 2 S 1749 Acidipropionibacterium jensenii 0.00 1 1 G 29404 Microlunatus 0.00 2 0 F 85015 Nocardioidaceae 0.00 2 2 G 1839 Nocardioides 0.05 53 2 O 85006 Micrococcales 0.02 22 0 F 85020 Dermabacteraceae 0.02 20 19 G 36739 Dermabacter 0.00 1 1 S 1630135 Dermabacter vaginalis 0.00 2 0 G 43668 Brachybacterium 0.00 2 0 G1 2623841 unclassified Brachybacterium 0.00 2 2 S 3023517 Brachybacterium sp. GPGPB12 0.02 18 1 F 85023 Microbacteriaceae 0.01 10 0 G 33882 Microbacterium 0.01 10 10 S 3079935 Microbacterium limosum 0.00 4 0 G 255204 Pseudoclavibacter 0.00 4 0 G1 2615177 unclassified Pseudoclavibacter 0.00 4 4 S 2866588 Pseudoclavibacter sp. Marseille-Q3772 0.00 2 0 G 33877 Agromyces 0.00 2 0 G1 2639701 unclassified Agromyces 0.00 2 2 S 3156399 Agromyces sp. G08B096 0.00 1 0 F1 1655488 Luna cluster 0.00 1 0 F2 1655489 Luna-1 subcluster 0.00 1 0 G 529883 Rhodoluna 0.00 1 1 S 535712 Candidatus Rhodoluna planktonica 0.01 6 1 F 1268 Micrococcaceae 0.00 2 0 G 32207 Rothia 0.00 1 1 S 43675 Rothia mucilaginosa 0.00 1 1 S 172042 Rothia aeria 0.00 2 0 G 1742989 Glutamicibacter 0.00 2 2 S 37929 Glutamicibacter nicotianae 0.00 1 1 G 57494 Nesterenkonia 0.00 4 0 F 85016 Cellulomonadaceae 0.00 4 0 G 1707 Cellulomonas 0.00 4 0 G1 2620175 unclassified Cellulomonas 0.00 4 4 S 2871170 Cellulomonas sp. C5510 0.00 1 0 F 2805591 Tropherymataceae 0.00 1 0 G 2038 Tropheryma 0.00 1 1 S 2039 Tropheryma whipplei 0.04 43 0 O 85011 Kitasatosporales 0.04 43 3 F 2062 Streptomycetaceae 0.04 40 1 G 1883 Streptomyces 0.03 34 18 G1 2593676 unclassified Streptomyces 0.00 4 4 S 2933779 Streptomyces sp. WAC00303 0.00 4 4 S 2898276 Streptomyces sp. MRC013 0.00 3 3 S 2594460 Streptomyces sp. S1A1-8 0.00 2 2 S 2750025 Streptomyces sp. CB00271 0.00 1 1 S 2903645 Streptomyces sp. NBC_00310 0.00 1 1 S 2975938 Streptomyces sp. NBC_01768 0.00 1 1 S 2730915 Streptomyces sp. Z423-1 0.00 1 1 S 1690221 Streptomyces spongiicola 0.00 1 1 S 1038928 Streptomyces xinghaiensis 0.00 1 1 S 40318 Streptomyces nodosus 0.00 1 0 G1 1477431 Streptomyces albidoflavus group 0.00 1 1 S 1886 Streptomyces albidoflavus 0.00 1 1 S 1616117 Streptomyces formicae 0.01 8 0 O 2037 Actinomycetales 0.01 8 1 F 2049 Actinomycetaceae 0.01 5 5 G 2529408 Schaalia 0.00 1 1 G 1654 Actinomyces 0.00 1 0 G 2815785 Scrofimicrobium 0.00 1 0 G1 2815815 unclassified Scrofimicrobium 0.00 1 1 S 3079930 Scrofimicrobium sp. R131 0.00 3 0 O 85012 Streptosporangiales 0.00 3 2 F 2012 Thermomonosporaceae 0.00 1 0 G 1988 Actinomadura 0.00 1 1 S 46158 Actinomadura citrea 0.00 1 0 O 85004 Bifidobacteriales 0.00 1 0 F 31953 Bifidobacteriaceae 0.00 1 0 G 1678 Bifidobacterium 0.00 1 0 S 216816 Bifidobacterium longum 0.00 1 1 S1 1682 Bifidobacterium longum subsp. infantis 0.00 1 0 O 85014 Glycomycetales 0.00 1 0 F 85034 Glycomycetaceae 0.00 1 0 G 283810 Stackebrandtia 0.00 1 0 S 283811 Stackebrandtia nassauensis 0.00 1 1 S1 446470 Stackebrandtia nassauensis DSM 44728 0.00 1 0 O 85008 Micromonosporales 0.00 1 0 F 28056 Micromonosporaceae 0.00 1 0 G 1865 Actinoplanes 0.00 1 0 G1 2626549 unclassified Actinoplanes 0.00 1 1 S 946334 Actinoplanes sp. OR16 0.01 10 0 C 84992 Acidimicrobiia 0.01 10 0 O 84993 Acidimicrobiales 0.01 10 0 F 2448023 Ilumatobacteraceae 0.01 10 0 G 682522 Ilumatobacter 0.01 10 0 S 467094 Ilumatobacter coccineus 0.01 10 10 S1 1313172 Ilumatobacter coccineus YM16-304 0.00 2 0 C 84998 Coriobacteriia 0.00 1 0 O 84999 Coriobacteriales 0.00 1 0 F 84107 Coriobacteriaceae 0.00 1 0 G 1472762 Enorma 0.00 1 1 S 1871019 Enorma phocaeensis 0.00 1 0 O 1643822 Eggerthellales 0.00 1 0 F 1643826 Eggerthellaceae 0.00 1 0 G 1926677 Raoultibacter 0.00 1 1 S 1907662 Raoultibacter timonensis 0.00 2 0 C 1497346 Thermoleophilia 0.00 1 1 O 588673 Solirubrobacterales 0.00 1 0 O 588674 Thermoleophilales 0.00 1 0 F 320796 Thermoleophilaceae 0.00 1 0 G 192992 Thermoleophilum 0.00 1 1 S 29539 Thermoleophilum album 0.00 1 0 C 84995 Rubrobacteria 0.00 1 0 O 84996 Rubrobacterales 0.00 1 0 F 84997 Rubrobacteraceae 0.00 1 0 G 42255 Rubrobacter 0.00 1 1 S 2653852 Rubrobacter marinus 0.04 36 0 D2 1798711 Cyanobacteriota/Melainabacteria group 0.04 36 1 P 1117 Cyanobacteriota 0.04 35 7 C 3028117 Cyanophyceae 0.02 18 0 C1 1301283 Oscillatoriophycideae 0.01 14 0 O 1150 Oscillatoriales 0.01 12 0 F 2934961 Sirenicapillariaceae 0.01 12 0 G 2596745 Limnospira 0.01 12 0 S 147322 Limnospira indica 0.01 12 12 S1 2760438 Limnospira indica BM01 0.00 2 0 F 1892254 Oscillatoriaceae 0.00 2 0 G 1198 Phormidium 0.00 2 0 S 2974039 Phormidium yuhuli 0.00 2 2 S1 2940671 Phormidium yuhuli AB48 0.00 4 0 O 1118 Chroococcales 0.00 4 0 F 1890449 Microcystaceae 0.00 4 0 G 1125 Microcystis 0.00 3 0 G1 2643300 unclassified Microcystis 0.00 3 3 S 1967666 Microcystis sp. MC19 0.00 1 0 S 1126 Microcystis aeruginosa 0.00 1 1 S1 2528657 Microcystis aeruginosa NRERC-214 0.00 3 1 O 1161 Nostocales 0.00 2 0 F 1892259 Aphanizomenonaceae 0.00 1 0 G 748770 Dolichospermum 0.00 1 0 S 136073 Dolichospermum compactum 0.00 1 1 S1 1973481 Dolichospermum compactum NIES-806 0.00 1 0 G 752201 Sphaerospermopsis 0.00 1 0 S 984207 Sphaerospermopsis torques-reginae 0.00 1 1 S1 984208 Sphaerospermopsis torques-reginae ITEP-024 0.00 3 0 O 3079749 Leptolyngbyales 0.00 3 0 F 1890438 Leptolyngbyaceae 0.00 3 0 F1 3081713 Leptolyngbya group 0.00 3 0 G 47251 Leptolyngbya 0.00 2 0 G1 2650499 unclassified Leptolyngbya 0.00 2 2 S 2812896 Leptolyngbya sp. 7M 0.00 1 1 S 1184 Leptolyngbya boryana 0.00 2 1 O 1890424 Synechococcales 0.00 1 0 F 1890426 Synechococcaceae 0.00 1 0 G 1129 Synechococcus 0.00 1 0 G1 2626047 unclassified Synechococcus 0.00 1 1 S 321327 Synechococcus sp. JA-3-3Ab 0.00 1 0 O 1955042 Gloeomargaritales 0.00 1 0 F 1955043 Gloeomargaritaceae 0.00 1 0 G 1188227 Gloeomargarita 0.00 1 0 S 1188228 Gloeomargarita lithophora 0.00 1 1 S1 1188229 Gloeomargarita lithophora Alchichica-D10 0.00 1 0 O 3079748 Oculatellales 0.00 1 0 F 2303507 Oculatellaceae 0.00 1 0 G 3065395 Thermocoleostomius 0.00 1 0 S 3065396 Thermocoleostomius sinensis 0.00 1 1 S1 2016057 Thermocoleostomius sinensis A174 0.03 26 0 P 200795 Chloroflexota 0.02 19 0 C 32061 Chloroflexia 0.02 19 1 O 32064 Chloroflexales 0.02 18 0 O1 1508594 Chloroflexineae 0.02 18 0 F 1106 Chloroflexaceae 0.02 18 0 G 1107 Chloroflexus 0.02 18 0 S 152260 Chloroflexus aggregans 0.02 18 18 S1 326427 Chloroflexus aggregans DSM 9485 0.00 3 0 C 292625 Anaerolineae 0.00 3 0 O 292629 Anaerolineales 0.00 3 0 F 292628 Anaerolineaceae 0.00 3 0 G 1649478 Pelolinea 0.00 3 3 S 913107 Pelolinea submarina 0.00 2 0 C 475962 Caldilineae 0.00 2 0 O 475963 Caldilineales 0.00 2 0 F 475964 Caldilineaceae 0.00 2 0 G 233191 Caldilinea 0.00 2 0 S 133453 Caldilinea aerophila 0.00 2 2 S1 926550 Caldilinea aerophila DSM 14535 = NBRC 104270 0.00 1 0 C 301297 Dehalococcoidia 0.00 1 0 O 1202465 Dehalococcoidales 0.00 1 0 F 1202464 Dehalococcoidaceae 0.00 1 1 G 670486 Dehalogenimonas 0.00 1 0 C 388447 Ktedonobacteria 0.00 1 0 O 388448 Ktedonobacterales 0.00 1 0 F 2692416 Ktedonosporobacteraceae 0.00 1 0 G 2692417 Ktedonosporobacter 0.00 1 1 S 2509675 Ktedonosporobacter rubrisoli 0.02 19 9 P 544448 Mycoplasmatota 0.01 7 0 O 2790996 Mycoplasmoidales 0.01 7 1 F 2790998 Mycoplasmoidaceae 0.00 4 0 G 2791001 Malacoplasma 0.00 4 0 S 28227 Malacoplasma penetrans 0.00 4 4 S1 272633 Malacoplasma penetrans HF-2 0.00 2 2 G 2129 Ureaplasma 0.00 3 0 C 31969 Mollicutes 0.00 2 0 O 2085 Mycoplasmatales 0.00 2 0 F 2092 Mycoplasmataceae 0.00 2 2 G 2093 Mycoplasma 0.00 1 0 O 186328 Entomoplasmatales 0.00 1 0 F 2131 Spiroplasmataceae 0.00 1 0 G 2132 Spiroplasma 0.00 1 0 S 2145 Spiroplasma taiwanense 0.00 1 1 S1 1276220 Spiroplasma taiwanense CT-1 0.01 6 0 P 67819 Armatimonadota 0.01 5 0 C 1663419 Fimbriimonadia 0.01 5 0 O 1663425 Fimbriimonadales 0.01 5 0 F 1663426 Fimbriimonadaceae 0.01 5 0 G 1005038 Fimbriimonas 0.01 5 0 S 1005039 Fimbriimonas ginsengisoli 0.01 5 5 S1 661478 Fimbriimonas ginsengisoli Gsoil 348 0.00 1 0 C 1077257 Chthonomonadia 0.00 1 0 O 1077263 Chthonomonadales 0.00 1 0 F 1077264 Chthonomonadaceae 0.00 1 0 G 1077265 Chthonomonas 0.00 1 0 S 454171 Chthonomonas calidirosea 0.00 1 1 S1 1303518 Chthonomonas calidirosea T49 0.00 1 0 P 1297 Deinococcota 0.00 1 0 C 188787 Deinococci 0.00 1 0 O 118964 Deinococcales 0.00 1 0 F 183710 Deinococcaceae 0.00 1 1 G 1298 Deinococcus 4.01 3923 0 D1 1783270 FCB group 3.99 3908 2 D2 68336 Bacteroidota/Chlorobiota group 3.97 3889 1 P 976 Bacteroidota 3.87 3788 0 C 768503 Cytophagia 3.87 3788 0 O 768507 Cytophagales 3.85 3765 0 F 89373 Cytophagaceae 3.85 3765 0 G 107 Spirosoma 3.85 3764 3764 S 2666025 Spirosoma endbachense 0.00 1 1 S 2735870 Spirosoma taeanense 0.02 19 0 F 2762286 Fulvivirgaceae 0.02 19 0 G 1433993 Chryseolinea 0.02 19 19 S 2321403 Chryseolinea soli 0.00 3 1 F 1853232 Hymenobacteraceae 0.00 2 2 G 89966 Hymenobacter 0.00 1 0 F 1853234 Persicobacteraceae 0.00 1 0 G 1434007 Fulvitalea 0.00 1 1 S 1182444 Fulvitalea axinellae 0.04 40 0 C 117743 Flavobacteriia 0.04 40 0 O 200644 Flavobacteriales 0.04 38 0 F 49546 Flavobacteriaceae 0.02 15 0 G 2967089 Abyssalbus 0.02 15 15 S 2926907 Abyssalbus ytuae 0.01 13 0 G 286104 Winogradskyella 0.01 13 13 S 2686077 Winogradskyella forsetii 0.01 6 0 G 326319 Dokdonia 0.01 6 0 G1 2615033 unclassified Dokdonia 0.01 6 6 S 983548 Dokdonia sp. 4H-3-7-5 0.00 3 0 G 237 Flavobacterium 0.00 3 0 G1 196869 unclassified Flavobacterium 0.00 3 3 S 2732161 Flavobacterium sp. IMCC34852 0.00 1 0 G 261827 Algibacter 0.00 1 0 G1 2615009 unclassified Algibacter 0.00 1 1 S 2686366 Algibacter sp. L3A6 0.00 1 0 O1 313602 Flavobacteriales incertae sedis 0.00 1 0 G 336809 Candidatus Karelsulcia 0.00 1 1 S 336810 Candidatus Karelsulcia muelleri 0.00 1 0 F 2762318 Weeksellaceae 0.00 1 0 G 59734 Empedobacter 0.00 1 1 S 343874 Empedobacter falsenii 0.03 33 0 C 200643 Bacteroidia 0.03 25 0 O 1970189 Marinilabiliales 0.02 20 0 F 558415 Marinilabiliaceae 0.02 19 0 G 1193324 Alkalitalea 0.02 19 19 S 889453 Alkalitalea saponilacus 0.00 1 0 G 3129724 Xiashengella 0.00 1 1 S 2949635 Xiashengella succiniciproducens 0.01 5 0 F 1471398 Prolixibacteraceae 0.00 4 0 G 1254401 Sunxiuqinia 0.00 4 0 G1 1573824 environmental samples 0.00 4 4 S 1573825 uncultured Sunxiuqinia sp. 0.00 1 0 G 1573808 Mangrovibacterium 0.00 1 1 S 1639118 Mangrovibacterium marinum 0.01 8 0 O 171549 Bacteroidales 0.00 4 0 F 171552 Prevotellaceae 0.00 2 0 G 838 Prevotella 0.00 1 1 S 28131 Prevotella intermedia 0.00 1 1 S 28132 Prevotella melaninogenica 0.00 1 0 G 2884814 Pseudoprevotella 0.00 1 1 S 2133944 Pseudoprevotella muciniphila 0.00 1 0 G 2974251 Segatella 0.00 1 1 S 165179 Segatella copri 0.00 3 0 F 815 Bacteroidaceae 0.00 3 0 G 816 Bacteroides 0.00 3 3 S 818 Bacteroides thetaiotaomicron 0.00 1 0 F 171551 Porphyromonadaceae 0.00 1 0 G 836 Porphyromonas 0.00 1 1 S 322095 Porphyromonas somerae 0.03 25 0 C 1853228 Chitinophagia 0.03 25 0 O 1853229 Chitinophagales 0.03 25 0 F 563835 Chitinophagaceae 0.03 25 0 G 1649506 Thermoflavifilum 0.03 25 0 G1 3099314 unclassified Thermoflavifilum 0.03 25 25 S 1968839 Thermoflavifilum sp. 0.00 2 0 C 117747 Sphingobacteriia 0.00 2 0 O 200666 Sphingobacteriales 0.00 2 0 F 84566 Sphingobacteriaceae 0.00 2 0 G 376469 Olivibacter 0.00 2 0 G1 2632301 unclassified Olivibacter 0.00 2 2 S 2592345 Olivibacter sp. LS-1 0.02 17 0 P 1853220 Rhodothermota 0.02 17 0 C 1853222 Rhodothermia 0.02 17 3 O 1853224 Rhodothermales 0.01 12 0 F 563843 Rhodothermaceae 0.01 12 0 G 2893090 Rhodocaloribacter 0.01 12 12 S 2558931 Rhodocaloribacter litoris 0.00 2 0 F 1853225 Salinibacteraceae 0.00 2 0 G 146918 Salinibacter 0.00 2 2 S 146919 Salinibacter ruber 0.02 15 0 P 456828 Candidatus Cloacimonadota 0.02 15 0 C 3039863 Candidatus Cloacimonadia 0.02 15 0 O 3039864 Candidatus Cloacimonadales 0.02 15 0 F 3039865 Candidatus Cloacimonadaceae 0.02 15 0 G 456826 Candidatus Cloacimonas 0.02 15 0 S 456827 Candidatus Cloacimonas acidaminovorans 0.02 15 15 S1 459349 Candidatus Cloacimonas acidaminovorans str. Evry 0.26 254 0 P 508458 Synergistota 0.26 254 0 C 649775 Synergistia 0.26 254 0 O 649776 Synergistales 0.26 253 0 F 649777 Synergistaceae 0.26 253 0 G 81411 Aminomonas 0.26 253 0 S 81412 Aminomonas paucivorans 0.26 253 253 S1 584708 Aminomonas paucivorans DSM 12260 0.00 1 0 F 3029087 Aminobacteriaceae 0.00 1 1 G 81466 Aminobacterium 0.13 126 0 D1 1783257 PVC group 0.09 89 0 P 203682 Planctomycetota 0.09 87 22 C 203683 Planctomycetia 0.04 35 0 O 2691354 Pirellulales 0.03 34 16 F 2691357 Pirellulaceae 0.02 18 0 G 123 Pirellula 0.02 18 0 S 125 Pirellula staleyi 0.02 18 18 S1 530564 Pirellula staleyi DSM 6068 0.00 1 1 F 2691359 Lacipirellulaceae 0.03 28 0 O 112 Planctomycetales 0.03 28 0 F 126 Planctomycetaceae 0.02 18 0 G 2795865 Thalassoglobus 0.02 18 18 S 2527994 Thalassoglobus polymorphus 0.01 6 0 G 1936111 Fuerstiella 0.01 6 6 S 1891926 Fuerstiella marisgermanici 0.00 3 1 G 1649453 Gimesia 0.00 1 1 S 2527964 Gimesia aquarii 0.00 1 1 S 2527976 Gimesia fumaroli 0.00 1 0 G 2795777 Maioricimonas 0.00 1 1 S 2528026 Maioricimonas rarisocia 0.00 2 0 O 2691356 Isosphaerales 0.00 2 2 F 1763524 Isosphaeraceae 0.00 2 0 C 666505 Phycisphaerae 0.00 1 0 O 666506 Phycisphaerales 0.00 1 0 F 666507 Phycisphaeraceae 0.00 1 0 G 2803301 Poriferisphaera 0.00 1 1 S 2528020 Poriferisphaera corsica 0.00 1 0 O 2483366 Sedimentisphaerales 0.00 1 0 F 2483367 Sedimentisphaeraceae 0.00 1 0 G 2690160 Limihaloglobus 0.00 1 1 S 1851148 Limihaloglobus sulfuriphilus 0.04 36 0 P 74201 Verrucomicrobiota 0.04 35 1 C 203494 Verrucomicrobiia 0.03 32 0 O 48461 Verrucomicrobiales 0.03 32 2 F 203557 Verrucomicrobiaceae 0.02 24 0 G 2911469 Sulfuriroseicoccus 0.02 24 24 S 2707525 Sulfuriroseicoccus oceanibius 0.01 6 0 G 2735 Verrucomicrobium 0.01 5 0 G1 2625155 unclassified Verrucomicrobium 0.01 5 5 S 1882831 Verrucomicrobium sp. GAS474 0.00 1 0 S 2736 Verrucomicrobium spinosum 0.00 1 1 S1 240016 Verrucomicrobium spinosum DSM 4136 = JCM 18804 0.00 2 0 O 134621 Limisphaerales 0.00 2 0 F 3050006 Fontisphaeraceae 0.00 2 0 G 3050007 Fontisphaera 0.00 2 2 S 2974023 Fontisphaera persica 0.00 1 0 P1 326457 Verrucomicrobiota incertae sedis 0.00 1 0 G 1541670 Methylacidimicrobium 0.00 1 1 G1 2730358 unclassified Methylacidimicrobium 0.00 1 0 P 134625 Kiritimatiellota 0.00 1 0 C 2907184 Tichowtungiia 0.00 1 0 O 2907185 Tichowtungiales 0.00 1 0 F 2907186 Tichowtungiaceae 0.00 1 0 G 2907187 Tichowtungia 0.00 1 1 S 2697043 Tichowtungia aerotolerans 0.08 79 17 P 200940 Thermodesulfobacteriota 0.03 31 0 C 3031449 Desulfovibrionia 0.03 31 0 O 213115 Desulfovibrionales 0.03 31 0 F 194924 Desulfovibrionaceae 0.02 21 21 G 2035811 Pseudodesulfovibrio 0.01 10 0 G 3126915 Taurinivorans 0.01 10 10 S 2787751 Taurinivorans muris 0.02 17 0 C 3031451 Desulfobulbia 0.02 17 0 O 3024411 Desulfobulbales 0.02 17 0 F 213121 Desulfobulbaceae 0.01 9 0 G 893 Desulfobulbus 0.01 9 9 S 1986146 Desulfobulbus oralis 0.01 8 0 G 3003266 Desulfolithobacter 0.01 8 8 S 2795293 Desulfolithobacter dissulfuricans 0.01 10 1 C 3031651 Desulfuromonadia 0.01 8 0 O 69541 Desulfuromonadales 0.01 7 0 F 213421 Desulfuromonadaceae 0.01 7 7 G 890 Desulfuromonas 0.00 1 0 F 3031665 Geoalkalibacteraceae 0.00 1 1 G 392332 Geoalkalibacter 0.00 1 0 O 3031668 Geobacterales 0.00 1 0 F 213422 Geobacteraceae 0.00 1 0 G 28231 Geobacter 0.00 1 0 G1 2627627 unclassified Geobacter 0.00 1 1 S 1277350 Geobacter sp. DSM 9736 0.00 2 0 C 67799 Thermodesulfobacteria 0.00 2 0 O 188710 Thermodesulfobacteriales 0.00 2 0 F 188711 Thermodesulfobacteriaceae 0.00 2 0 G 2033601 Thermosulfuriphilus 0.00 2 2 S 1936021 Thermosulfuriphilus ammonigenes 0.00 1 0 C 3024408 Syntrophobacteria 0.00 1 0 O 213462 Syntrophobacterales 0.00 1 0 F 213465 Syntrophobacteraceae 0.00 1 0 G 29526 Syntrophobacter 0.00 1 0 S 119484 Syntrophobacter fumaroxidans 0.00 1 1 S1 335543 Syntrophobacter fumaroxidans MPOB 0.00 1 0 C 3024418 Desulfobacteria 0.00 1 0 O 213118 Desulfobacterales 0.00 1 0 F 2931039 Desulfococcaceae 0.00 1 0 G 45654 Desulfonema 0.00 1 1 S 45656 Desulfonema limicola 0.05 49 0 P 29547 Campylobacterota 0.05 49 0 C 3031852 Epsilonproteobacteria 0.05 49 0 O 213849 Campylobacterales 0.04 40 0 F 72293 Helicobacteraceae 0.04 40 2 G 209 Helicobacter 0.03 30 30 S 213 Helicobacter cinaedi 0.01 8 8 S 210 Helicobacter pylori 0.01 9 0 F 72294 Campylobacteraceae 0.01 9 0 G 194 Campylobacter 0.00 4 4 S 449520 Campylobacter canadensis 0.00 2 0 S 522485 Campylobacter avium 0.00 2 2 S1 522484 Campylobacter avium LMG 24591 0.00 2 2 S 197 Campylobacter jejuni 0.00 1 1 S 824 Campylobacter gracilis 0.02 23 0 P 2818505 Myxococcota 0.01 13 0 C 32015 Myxococcia 0.01 13 0 O 29 Myxococcales 0.01 13 0 O1 80811 Cystobacterineae 0.01 9 0 F 39 Archangiaceae 0.01 9 0 G 40 Stigmatella 0.01 9 0 S 41 Stigmatella aurantiaca 0.01 9 9 S1 378806 Stigmatella aurantiaca DW4/3-1 0.00 4 0 F 1524215 Anaeromyxobacteraceae 0.00 4 4 G 161492 Anaeromyxobacter 0.01 10 0 P1 3031711 Polyangia 0.01 9 1 O 3031712 Polyangiales 0.01 6 1 F 49 Polyangiaceae 0.01 5 0 G 50 Chondromyces 0.01 5 5 S 52 Chondromyces crocatus 0.00 2 0 F 1055686 Sandaracinaceae 0.00 2 0 G 1055688 Sandaracinus 0.00 2 2 S 927083 Sandaracinus amylolyticus 0.00 1 0 O 3031713 Nannocystales 0.00 1 0 F 224463 Nannocystaceae 0.00 1 0 G 53 Nannocystis 0.00 1 1 S 2995304 Nannocystis poenicansa 0.02 16 0 D1 2323 Bacteria incertae sedis 0.02 16 0 D2 1783234 Bacteria candidate phyla 0.02 16 16 P 95818 Candidatus Saccharibacteria 0.01 13 0 P 203691 Spirochaetota 0.01 13 0 C 203692 Spirochaetia 0.01 13 0 O 136 Spirochaetales 0.01 12 0 F 2845253 Treponemataceae 0.01 12 0 G 157 Treponema 0.01 6 6 S 162 Treponema phagedenis 0.01 6 6 S 165 Treponema saccharophilum 0.00 1 0 F 1643685 Borreliaceae 0.00 1 0 G 64895 Borreliella 0.00 1 1 S 100177 Borreliella lusitaniae 0.01 9 0 P 2138240 Coprothermobacterota 0.01 9 0 C 2138243 Coprothermobacteria 0.01 9 0 O 2138246 Coprothermobacterales 0.01 9 0 F 2138247 Coprothermobacteraceae 0.01 9 0 G 68335 Coprothermobacter 0.01 9 0 S 35786 Coprothermobacter proteolyticus 0.01 9 9 S1 309798 Coprothermobacter proteolyticus DSM 5265 0.00 4 0 P 57723 Acidobacteriota 0.00 4 0 C 533205 Holophagae 0.00 4 0 O 574975 Holophagales 0.00 4 0 F 574976 Holophagaceae 0.00 3 3 G 44675 Geothrix 0.00 1 0 G 35838 Holophaga 0.00 1 0 G1 89282 environmental samples 0.00 1 1 S 188475 uncultured Holophaga sp. 0.00 1 0 D1 68525 delta/epsilon subdivisions 0.00 1 0 C 28221 Deltaproteobacteria 0.00 1 0 O 1779134 Bradymonadales 0.00 1 0 F 1779135 Bradymonadaceae 0.00 1 0 G 1779136 Bradymonas 0.00 1 1 S 1548548 Bradymonas sediminis 0.00 1 0 P 74152 Elusimicrobiota 0.00 1 0 C 641853 Elusimicrobia 0.00 1 0 O 641854 Elusimicrobiales 0.00 1 0 F 641876 Elusimicrobiaceae 0.00 1 0 G 423604 Elusimicrobium 0.00 1 0 S 423605 Elusimicrobium minutum 0.00 1 1 S1 445932 Elusimicrobium minutum Pei191 0.00 1 0 P 200930 Deferribacterota 0.00 1 0 C 68337 Deferribacteres 0.00 1 0 O 191393 Deferribacterales 0.00 1 0 F 2945021 Calditerrivibrionaceae 0.00 1 0 G 545865 Calditerrivibrio 0.00 1 0 S 477976 Calditerrivibrio nitroreducens 0.00 1 1 S1 768670 Calditerrivibrio nitroreducens DSM 19672 0.00 1 0 P 40117 Nitrospirota 0.00 1 0 C 203693 Nitrospiria 0.00 1 0 O 189778 Nitrospirales 0.00 1 0 F 189779 Nitrospiraceae 0.00 1 1 G 1234 Nitrospira 0.00 1 0 P 32066 Fusobacteriota 0.00 1 0 C 203490 Fusobacteriia 0.00 1 0 O 203491 Fusobacteriales 0.00 1 0 F 1129771 Leptotrichiaceae 0.00 1 0 G 32067 Leptotrichia 0.00 1 1 S 157687 Leptotrichia wadei